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Data Summary

Genomes analysed CRISPRs found (*)
Archea 150 557(125)
Bacteria 2612 3502(1176)
Total 2762 4059(1301)

*number of convincing CRISPR structures (number of genomes with such CRISPR)

Database status:
Last update : 2014-07-23

Contact:
Christine POURCEL


Genomes analysed CRISPRs found Strains with convincing CRISPR(s) Strains devoid of detectable CRISPRs
Archea 150 557 125 25
Bacteria 2612 3502 1176 873
Total 2762 4059 1301 898

Click on strain name to get more information.

Bacteria

Xanthomonas fuscans subsp. fuscans
Amycolatopsis orientalis HCCB10007     (2 questionable structures)
Spirochaeta sp. L21-RPul-D2     (3 CRISPRs)
Acholeplasma palmae J233     (1 CRISPR)
Pseudomonas aeruginosa c7447m     (1 questionable structure)
Pseudomonas aeruginosa PAO1-VE13
Acholeplasma brassicae     (1 questionable structure)
Plautia stali symbiont     (1 questionable structure)
Anaplasma marginale str. Dawn     (1 questionable structure)
Mycobacterium kansasii ATCC 12478
delta proteobacterium BABL1
Burkholderia pseudomallei NCTC 13179     (1 questionable structure)
Clostridium autoethanogenum DSM 10061     (3 CRISPRs)
Adlercreutzia equolifaciens DSM 19450     (6 questionable structures)
Bifidobacterium animalis subsp. lactis ATCC 27673     (2 CRISPRs, 2 questionable structures)
Actinoplanes friuliensis DSM 7358     (2 questionable structures)
Streptomyces rapamycinicus NRRL 5491     (10 CRISPRs, 4 questionable structures)
Leifsonia xyli subsp. cynodontis DSM 46306
Helicobacter pylori BM012A     (1 questionable structure)
Mycoplasma gallisepticum S6     (1 CRISPR, 3 questionable structures)
Hyphomicrobium nitrativorans NL23     (1 CRISPR, 5 questionable structures)
Serratia sp. ATCC 39006     (6 CRISPRs, 1 questionable structure)
Salmonella enterica subsp. enterica serovar Thompson str. RM6836     (2 CRISPRs)
Desulfovibrio gigas DSM 1382 = ATCC 19364     (2 CRISPRs, 2 questionable structures)
Streptococcus sp. I-G2     (1 CRISPR, 2 questionable structures)
Streptococcus sp. I-P16
Sulfuricella denitrificans skB26     (1 questionable structure)
Gloeobacter kilaueensis JS1     (5 CRISPRs, 1 questionable structure)
Staphylococcus aureus subsp. aureus SA40     (1 CRISPR, 4 questionable structures)
Aeropyrum camini SY1 = JCM 12091     (4 CRISPRs, 1 questionable structure)
Staphylococcus aureus subsp. aureus SA957     (1 CRISPR, 4 questionable structures)
Achromobacter xylosoxidans NBRC 15126 = ATCC 27061
Thermotoga elfii NBRC 107921     (3 CRISPRs, 1 questionable structure)
Thermotoga hypogea NBRC 106472     (4 CRISPRs)
Clostridium tetani 12124569     (8 CRISPRs)
Klebsiella pneumoniae CG43     (1 questionable structure)
Campylobacter sp. 03-427     (3 CRISPRs)
Streptococcus dysgalactiae subsp. equisimilis 167     (1 questionable structure)
Carnobacterium sp. WN1359     (2 questionable structures)
Campylobacter coli CVM N29710
Spiroplasma apis B31     (1 CRISPR)
Staphylococcus pasteuri SP1     (2 CRISPRs, 1 questionable structure)
Pseudomonas aeruginosa PA1     (1 questionable structure)
Pseudomonas aeruginosa PA1R     (1 questionable structure)
Enterococcus mundtii QU 25     (3 questionable structures)
Alteromonas macleodii str. 'Aegean Sea MED64'     (1 questionable structure)
Haemophilus influenzae KR494     (1 questionable structure)
Listeria monocytogenes EGD     (2 CRISPRs, 2 questionable structures)
Escherichia coli LY180     (2 CRISPRs, 1 questionable structure)
Streptococcus suis T15     (2 questionable structures)
Clostridium saccharobutylicum DSM 13864     (2 CRISPRs, 2 questionable structures)
Campylobacter jejuni 4031     (1 CRISPR, 1 questionable structure)
Escherichia coli JJ1886     (1 CRISPR, 1 questionable structure)
Campylobacter jejuni subsp. jejuni 00-2425     (1 questionable structure)
Bacillus infantis NRRL B-14911     (5 questionable structures)
Methanobacterium sp. MB1     (2 CRISPRs)
Campylobacter jejuni subsp. jejuni 00-2426     (1 questionable structure)
Campylobacter jejuni subsp. jejuni 00-2538     (1 questionable structure)
Escherichia coli PMV-1     (2 CRISPRs, 3 questionable structures)
Campylobacter jejuni subsp. jejuni 00-2544     (1 CRISPR, 1 questionable structure)
Bacillus amyloliquefaciens subsp. plantarum NAU-B3
candidate division SR1 bacterium RAAC1_SR1_1     (4 CRISPRs)
Thermosynechococcus sp. NK55     (1 CRISPR)
Lactococcus lactis subsp. lactis KLDS 4.0325
Bacteroides sp. CF50     (1 CRISPR)
Acinetobacter baumannii ZW85-1
Cronobacter sakazakii CMCC 45402     (2 CRISPRs, 6 questionable structures)
Salmonella enterica subsp. enterica serovar Agona str. 24249     (2 CRISPRs)
Staphylococcus aureus subsp. aureus Z172     (2 CRISPRs, 3 questionable structures)
Mesoplasma florum W37     (1 questionable structure)
Brucella ceti TE28753-12     (1 questionable structure)
Helicobacter pylori BM012S     (1 questionable structure)
Streptococcus pneumoniae A026     (2 questionable structures)
Lactobacillus johnsonii N6.2     (1 questionable structure)
Pediococcus pentosaceus SL4     (1 CRISPR)
Pseudomonas aeruginosa LES431     (1 CRISPR)
Anaplasma marginale str. Gypsy Plains
Bacillus subtilis PY79
Pseudomonas aeruginosa MTB-1     (1 questionable structure)
Pseudomonas sp. TKP     (2 questionable structures)
Bacillus toyonensis BCT-7112     (3 questionable structures)
Haloarcula hispanica N601     (1 CRISPR)
Brucella ceti TE10759-12     (3 questionable structures)
Ehrlichia muris AS145     (3 questionable structures)
Pseudomonas aeruginosa SCV20265     (5 CRISPRs)
Paenibacillus polymyxa CR1     (4 CRISPRs)
Magnetospirillum gryphiswaldense MSR-1 v2     (2 questionable structures)
Pseudomonas monteilii SB3078     (1 questionable structure)
Pseudomonas monteilii SB3101     (1 questionable structure)
Rhodococcus pyridinivorans SB3094
Sulfolobus acidocaldarius SUSAZ     (2 CRISPRs, 2 questionable structures)
Desulfovibrio hydrothermalis     (6 CRISPRs)
Thermotoga maritima MSB8     (16 CRISPRs)
Candidatus Caldiarchaeum subterraneum     (5 CRISPRs)
Vibrio harveyi ATCC BAA-1116     (2 CRISPRs, 6 questionable structures)
Mycobacterium tuberculosis str. Haarlem     (3 CRISPRs, 1 questionable structure)
Rhizobium sp. IRBG74     (1 questionable structure)
Bacillus thuringiensis YBT-1518     (2 questionable structures)
Salmonella enterica subsp. enterica serovar Typhimurium str. DT2     (3 CRISPRs)
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023     (3 CRISPRs)
Pseudomonas sp. VLB120
Paenibacillus larvae subsp. larvae DSM 25430     (1 CRISPR)
Candidatus Phytoplasma solani
Mycobacterium neoaurum VKM Ac-1815D     (1 questionable structure)
Shigella dysenteriae 1617     (8 CRISPRs, 29 questionable structures)
Salmonella enterica subsp. enterica serovar Typhimurium str. DT104     (2 CRISPRs)
Candidatus Symbiobacter mobilis CR     (4 CRISPRs, 1 questionable structure)
Leisingera methylohalidivorans DSM 14336
Vibrio alginolyticus NBRC 15630 = ATCC 17749
Chlamydia pecorum PV3056/3
Chlamydia pecorum W73
Chlamydia pecorum P787
Halyomorpha halys symbiont
Candidatus Liberibacter americanus str. Sao Paulo
Candidatus Tremblaya phenacola PAVE
Lactococcus lactis subsp. cremoris KW2
Blattabacterium sp. (Nauphoeta cinerea)
Spiribacter sp. UAH-SP71
Francisella noatunensis subsp. orientalis LADL--07-285A
Campylobacter coli 15-537360
Pandoraea sp. RB-44
Dehalococcoides mccartyi GY50
candidate division WWE3 bacterium RAAC2_WWE3_1
Candidatus Saccharibacteria bacterium RAAC3_TM7_1
Exiguobacterium sp. MH3
Mycoplasma parvum str. Indiana
Bacillus amyloliquefaciens CC178
Bacillus amyloliquefaciens LFB112
Mycoplasma ovis str. Michigan
Pandoraea pnomenusa 3kgm
Phaeobacter gallaeciensis DSM 26640
Chlamydia trachomatis C/TW-3
Vibrio nigripulchritudo
Mycoplasma hyorhinis DBS 1050
Pseudomonas fluorescens R124
Streptomyces collinus Tu 365     (4 questionable structures)
Sorangium cellulosum So0157-2     (3 CRISPRs, 21 questionable structures)
Proteus mirabilis BB2000
Bifidobacterium animalis subsp. lactis Bl12     (1 CRISPR, 1 questionable structure)
Geobacillus sp. JF8     (2 CRISPRs)
Serratia plymuthica 4Rx13
Halorhabdus tiamatea SARL4B     (1 CRISPR, 1 questionable structure)
Amycolatopsis mediterranei RB     (4 CRISPRs, 6 questionable structures)
Ralstonia solanacearum CMR15
Chlamydia trachomatis RC-L2/55
Chlamydia trachomatis RC-J/971
Arcobacter butzleri 7h1h
Streptococcus lutetiensis 033     (2 CRISPRs)
Acinetobacter baumannii BJAB07104     (1 questionable structure)
Acinetobacter baumannii BJAB0715     (1 questionable structure)
Acinetobacter baumannii BJAB0868     (1 questionable structure)
Salmonella enterica subsp. enterica serovar Heidelberg str. 41578     (3 CRISPRs)
Rhodococcus erythropolis CCM2595     (4 questionable structures)
Mycobacterium yongonense 05-1390     (1 CRISPR, 2 questionable structures)
Bacillus amyloliquefaciens subsp. plantarum UCMB5113
Achromobacter xylosoxidans NH44784-1996     (2 questionable structures)
Anaplasma phagocytophilum str. JM     (1 questionable structure)
Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189     (2 CRISPRs)
Anaplasma phagocytophilum str. HZ2     (1 questionable structure)
Anaplasma phagocytophilum str. Dog2     (1 questionable structure)
Staphylococcus aureus subsp. aureus CN1     (2 CRISPRs, 3 questionable structures)
Salmonella bongori N268-08     (2 CRISPRs)
Cycloclasticus zancles 7-ME     (1 CRISPR)
Corynebacterium terpenotabidum Y-11     (3 CRISPRs)
Corynebacterium maris DSM 45190     (1 questionable structure)
Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67     (2 CRISPRs)
Candidatus Methanomethylophilus alvus Mx1201     (2 CRISPRs, 1 questionable structure)
Variovorax paradoxus B4     (1 questionable structure)
uncultured Sulfuricurvum sp. RIFRC-1
Mannheimia haemolytica D153     (1 CRISPR, 2 questionable structures)
Ralstonia solanacearum FQY_4
Acetobacter pasteurianus 386B
Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921     (3 CRISPRs)
Salmonella enterica subsp. enterica serovar Cubana str. CFSAN002050     (2 CRISPRs)
Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002069     (3 CRISPRs)
Spiroplasma taiwanense CT-1
Spiroplasma diminutum CUAS-1     (1 questionable structure)
Lactobacillus plantarum ZJ316     (1 CRISPR)
Treponema pedis str. T A4     (1 CRISPR)
Salmonella enterica subsp. enterica serovar Pullorum str. S06004     (2 CRISPRs)
Alteromonas macleodii str. 'English Channel 615'     (1 questionable structure)
Alteromonas macleodii str. 'Ionian Sea U4'     (1 questionable structure)
Alteromonas macleodii str. 'Ionian Sea U7'     (2 questionable structures)
Alteromonas macleodii str. 'Ionian Sea U8'     (2 questionable structures)
Alteromonas macleodii str. 'Ionian Sea UM7'     (2 questionable structures)
Alteromonas macleodii str. 'Ionian Sea UM4b'     (1 questionable structure)
Borrelia miyamotoi LB-2001
Enterococcus faecium Aus0085
Mycobacterium tuberculosis EAI5     (2 CRISPRs, 1 questionable structure)
Corynebacterium glutamicum MB001     (1 questionable structure)
Mannheimia haemolytica D171     (1 CRISPR, 1 questionable structure)
Mannheimia haemolytica D174     (1 CRISPR, 2 questionable structures)
Erysipelothrix rhusiopathiae SY1027
Lactobacillus rhamnosus LOCK900     (1 CRISPR, 2 questionable structures)
Lactobacillus rhamnosus LOCK908     (1 questionable structure)
Lactobacillus casei LOCK919     (1 CRISPR, 2 questionable structures)
Salmonella enterica subsp. enterica serovar Bovismorbificans str. 3114     (2 CRISPRs)
Staphylococcus aureus Bmb9393     (1 CRISPR, 5 questionable structures)
Helicobacter pylori UM298
Rhizobium etli bv. mimosae str. Mim1
Borrelia burgdorferi CA382
Burkholderia pseudomallei MSHR305     (2 questionable structures)
Streptococcus pyogenes HSC5
Vibrio parahaemolyticus O1:K33 str. CDC_K4557
Vibrio parahaemolyticus O1:Kuk str. FDA_R31     (1 questionable structure)
Campylobacter jejuni 32488     (1 CRISPR)
Bacillus amyloliquefaciens subsp. plantarum UCMB5033
Pseudomonas aeruginosa RP73     (2 CRISPRs)
Chlamydia trachomatis F/11-96
Candidatus Sulcia muelleri str. Sulcia-ALF
Candidatus Nasuia deltocephalinicola str. NAS-ALF
Serratia liquefaciens ATCC 27592
Serratia plymuthica S13
Corynebacterium argentoratense DSM 44202
Helicobacter pylori SouthAfrica20     (1 questionable structure)
Lactobacillus reuteri TD1     (1 CRISPR)
Thermofilum sp. 1910b     (15 CRISPRs, 1 questionable structure)
Mannheimia haemolytica USMARC_2286     (1 CRISPR, 2 questionable structures)
Campylobacter coli 76339     (1 CRISPR)
Paracoccus aminophilus JCM 7686     (2 CRISPRs)
Klebsiella pneumoniae JM45     (1 questionable structure)
Staphylococcus aureus subsp. aureus 6850     (5 questionable structures)
Listeria monocytogenes     (9 CRISPRs, 10 questionable structures)
butyrate-producing bacterium SM4/1     (1 questionable structure)
butyrate-producing bacterium SS3/4     (3 questionable structures)
butyrate-producing bacterium SSC/2
Ralstonia solanacearum
Lactobacillus helveticus CNRZ32
Ferroplasma acidarmanus fer1     (2 CRISPRs, 1 questionable structure)
Fusobacterium nucleatum subsp. vincentii 3_1_36A2     (1 CRISPR, 1 questionable structure)
Thermococcus litoralis DSM 5473     (7 CRISPRs)
Lactobacillus paracasei subsp. paracasei 8700:2     (1 CRISPR, 1 questionable structure)
Psychrobacter sp. G     (1 CRISPR, 1 questionable structure)
Klebsiella pneumoniae     (1 CRISPR)
Prevotella sp. oral taxon 299 str. F0039     (2 questionable structures)
Staphylococcus aureus subsp. aureus 55/2053     (6 questionable structures)
Candidatus Carsonella ruddii DC
Candidatus Profftella armatura
Streptococcus constellatus subsp. pharyngis C232
Mycoplasma hyopneumoniae 7422
Chlamydia trachomatis     (1 questionable structure)
Streptococcus intermedius C270     (1 questionable structure)
Streptococcus intermedius B196     (1 CRISPR)
Streptococcus constellatus subsp. pharyngis C818
Streptococcus constellatus subsp. pharyngis C1050
Streptococcus anginosus C1051     (3 CRISPRs, 2 questionable structures)
Streptococcus anginosus C238
Clostridium pasteurianum BC1     (1 CRISPR)
Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736     (3 CRISPRs)
Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1     (2 CRISPRs)
Listonella anguillarum M3     (1 questionable structure)
Chlamydia trachomatis RC-F/69
Chlamydia trachomatis RC-L2(s)/46
Chlamydia trachomatis RC-F(s)/852
Chlamydia trachomatis RC-J/943
Chlamydia trachomatis RC-J/953
Chlamydia trachomatis RC-L2(s)/3
Chlamydia trachomatis RC-F(s)/342
Chlamydia trachomatis RC-J(s)/122
Chlamydia trachomatis RC-J/966
Chlamydia trachomatis J/6276tet1
Listeria monocytogenes J1816     (1 questionable structure)
Listeria monocytogenes J1-220     (1 questionable structure)
Mycoplasma pneumoniae M129-B7
Eubacterium siraeum V10Sc8a     (2 CRISPRs, 1 questionable structure)
Bifidobacterium longum subsp. longum F8     (1 questionable structure)
Lactobacillus brevis KB290     (1 CRISPR)
Pseudomonas fluorescens A506     (5 questionable structures)
Thermoplasmatales archaeon BRNA1
Chlamydia trachomatis A/363
Chlamydia trachomatis A/5291
Chlamydia trachomatis A/7249
Chlamydia trachomatis D/SotonD1
Chlamydia trachomatis D/SotonD5
Chlamydia trachomatis D/SotonD6
Chlamydia trachomatis E/SotonE4
Chlamydia trachomatis E/SotonE8
Chlamydia trachomatis F/SotonF3
Chlamydia trachomatis G/SotonG1
Chlamydia trachomatis Ia/SotonIa1
Chlamydia trachomatis Ia/SotonIa3
Chlamydia trachomatis K/SotonK1
Chlamydia trachomatis L1/440/LN
Chlamydia trachomatis L1/115
Chlamydia trachomatis L1/224
Chlamydia trachomatis L2/25667R
Chlamydia trachomatis L2b/8200/07
Chlamydia trachomatis L2b/UCH-2
Chlamydia trachomatis L2b/LST
Chlamydia trachomatis L2b/CV204
Chlamydia trachomatis L2b/795
Chlamydia trachomatis L2b/Ams1
Chlamydia trachomatis L2b/Ams2
Chlamydia trachomatis L2b/Ams3
Chlamydia trachomatis L2b/Ams4
Chlamydia trachomatis L2b/Ams5
Chlamydia trachomatis L3/404/LN
Staphylococcus aureus subsp. aureus ST228
Chlamydia trachomatis L2b/Canada1
Chlamydia trachomatis L2b/Canada2
Chlamydia trachomatis L1/1322/p2
Legionella pneumophila subsp. pneumophila str. Hextuple_2q
Legionella pneumophila subsp. pneumophila str. Hextuple_3a
Taylorella asinigenitalis 14/45
Taylorella equigenitalis 14/56
Clavibacter michiganensis subsp. nebraskensis NCPPB 2581
Enterococcus faecium NRRL B-2354     (1 questionable structure)
Escherichia coli str. K-12 substr. MDS42     (2 CRISPRs, 2 questionable structures)
Mycoplasma hyopneumoniae 168-L     (1 questionable structure)
Candidatus Mycoplasma haemominutum 'Birmingham 1'
Clostridium stercorarium subsp. stercorarium DSM 8532     (20 CRISPRs)
Corynebacterium callunae DSM 20147     (1 questionable structure)
Pseudomonas protegens CHA0
Morganella morganii subsp. morganii KT
Glaciecola psychrophila 170
Propionibacterium acnes HL096PA1
Xanthomonas citri subsp. citri Aw12879
Mycobacterium tuberculosis 7199-99     (1 CRISPR, 1 questionable structure)
Bacillus subtilis subsp. subtilis 6051-HGW
Synechocystis sp. PCC 6803     (3 CRISPRs)
Treponema pallidum str. Fribourg-Blanc
Pectobacterium sp. SCC3193
Enterobacter sp. R4-368
Propionibacterium avidum 44067
Salmonella enterica subsp. enterica serovar Typhimurium str. U288
Bibersteinia trehalosi USDA-ARS-USMARC-192     (4 CRISPRs, 1 questionable structure)
Candidatus Liberibacter asiaticus str. gxpsy     (1 questionable structure)
Bdellovibrio exovorus JSS     (1 CRISPR)
Klebsiella oxytoca E718     (1 CRISPR, 2 questionable structures)
Mycobacterium avium subsp. paratuberculosis MAP4     (1 questionable structure)
Legionella pneumophila subsp. pneumophila str. Thunder Bay
Streptomyces hygroscopicus subsp. jinggangensis TL01
Corynebacterium glutamicum K051     (1 questionable structure)
Helicobacter cinaedi ATCC BAA-847     (2 CRISPRs)
Streptococcus pyogenes M1 476
Pseudomonas putida NBRC 14164
Streptomyces davawensis JCM 4913
Pseudomonas putida HB3267     (2 questionable structures)
Helicobacter heilmannii ASB1.4     (4 questionable structures)
Blattabacterium sp. (Panesthia angustipennis spadica) str. BPAA
Corynebacterium glutamicum SCgG1
Corynebacterium glutamicum SCgG2
Listeria monocytogenes N53-1
Candidatus Moranella endobia PCVAL
Sinorhizobium meliloti GR4
Wolbachia endosymbiont of Drosophila simulans wNo
Wolbachia endosymbiont of Drosophila simulans wHa
Pseudomonas resinovorans NBRC 106553
Streptococcus suis SC070731
Helicobacter pylori OK113
Helicobacter pylori OK310     (1 CRISPR)
Mannheimia haemolytica USDA-ARS-USMARC-185     (1 CRISPR, 2 questionable structures)
Mannheimia haemolytica USDA-ARS-USMARC-183     (1 CRISPR, 3 questionable structures)
Burkholderia thailandensis MSMB121     (1 questionable structure)
Bifidobacterium thermophilum RBL67     (13 CRISPRs, 4 questionable structures)
Chlamydia trachomatis IU824
Chlamydia trachomatis IU888
Spiribacter salinus M19-40
Chlamydia trachomatis L2/434/Bu(f)
Chlamydia trachomatis L2/434/Bu(i)
Streptomyces sp. PAMC26508
Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992     (2 CRISPRs)
Spiroplasma chrysopicola DF-1
Spiroplasma syrphidicola EA-1
Streptococcus suis TL13
Bacillus thuringiensis serovar kurstaki str. HD73     (2 questionable structures)
Pseudomonas aeruginosa B136-33
Azotobacter vinelandii CA     (2 CRISPRs, 1 questionable structure)
Azotobacter vinelandii CA6     (2 CRISPRs, 1 questionable structure)
Raoultella ornithinolytica B6
Bacillus thuringiensis serovar thuringiensis str. IS5056     (2 CRISPRs, 1 questionable structure)
Sinorhizobium meliloti 2011
Edwardsiella tarda C07-087
Aeromonas hydrophila ML09-119     (1 CRISPR, 2 questionable structures)
Rickettsia prowazekii str. NMRC Madrid E
Rickettsia prowazekii str. Breinl
Mycoplasma putrefaciens Mput9231
Pseudomonas denitrificans ATCC 13867
Candidatus Portiera aleyrodidarum TV     (1 questionable structure)
Thalassolituus oleivorans MIL-1
Bacillus subtilis subsp. subtilis str. BAB-1
Streptococcus oligofermentans AS 1.3089
Mycobacterium abscessus subsp. bolletii 50594
Chthonomonas calidirosea T49     (1 questionable structure)
Streptomyces fulvissimus DSM 40593
Mycobacterium tuberculosis str. Haarlem/NITR202     (2 CRISPRs, 3 questionable structures)
Xanthomonas axonopodis Xac29-1
Staphylococcus aureus M1
Mycobacterium tuberculosis str. Beijing/NITR203     (2 CRISPRs, 2 questionable structures)
Streptococcus agalactiae 09mas018883
Streptococcus agalactiae ILRI005
Mycobacterium tuberculosis CAS/NITR204     (2 CRISPRs, 2 questionable structures)
Mycobacterium tuberculosis EAI5/NITR206     (2 CRISPRs, 1 questionable structure)
Streptococcus agalactiae
Helicobacter pylori UM032
Ilumatobacter coccineum YM16-304     (10 questionable structures)
Lactobacillus acidophilus La-14     (1 CRISPR)
Mannheimia haemolytica M42548     (1 CRISPR, 2 questionable structures)
Streptococcus agalactiae ILRI112
Streptococcus iniae SF1
Idiomarina loihiensis GSL 199
Helicobacter pylori UM299
Helicobacter pylori UM037     (1 CRISPR, 1 questionable structure)
Helicobacter pylori UM066     (1 CRISPR)
Haemophilus parasuis ZJ0906     (1 questionable structure)
Staphylococcus aureus CA-347
Lactobacillus plantarum 16     (1 questionable structure)
Pseudomonas putida H8234
Candidatus Saccharimonas aalborgensis
Lactobacillus reuteri I5007
Bacillus anthracis str. A2012
Ruminococcus champanellensis 18P13
Treponema pallidum subsp. pallidum str. Nichols
Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Polaribacter sp. MED152
Psychromonas sp. CNPT3
Bifidobacterium breve UCC2003     (2 CRISPRs, 2 questionable structures)
Micavibrio aeruginosavorus EPB
Octadecabacter arcticus 238
Octadecabacter antarcticus 307
Fusobacterium nucleatum subsp. polymorphum ATCC 10953     (1 questionable structure)
Serratia marcescens WW4
Mycobacterium tuberculosis CCDC5079     (2 CRISPRs, 4 questionable structures)
Borrelia valaisiana VS116
Treponema pallidum subsp. pallidum SS14
Streptomyces albus J1074
Fusobacterium nucleatum subsp. animalis 4_8     (1 CRISPR, 2 questionable structures)
Mycoplasma fermentans PG18     (1 questionable structure)
Meiothermus ruber DSM 1279     (12 CRISPRs)
Salmonella enterica subsp. enterica serovar Typhi str. Ty21a
Hydrogenobaculum sp. SN     (7 CRISPRs, 1 questionable structure)
Enterococcus casseliflavus EC20
Chlamydia trachomatis E/Bour
Actinoplanes sp. N902-109     (5 CRISPRs, 8 questionable structures)
Synergistetes bacterium SGP1
Mycobacterium tuberculosis str. Erdman = ATCC 35801     (2 CRISPRs, 1 questionable structure)
Gordonibacter pamelaeae 7-10-1-b     (2 CRISPRs)
Bacteroides xylanisolvens XB1A     (1 questionable structure)
Enterococcus sp. 7L76     (1 CRISPR, 1 questionable structure)
Ruminococcus torques L2-14
Ruminococcus obeum A2-162
Roseburia intestinalis M50/1
Megamonas hypermegale ART12/1     (7 CRISPRs)
Eubacterium rectale M104/1     (7 CRISPRs, 2 questionable structures)
Eubacterium rectale DSM 17629     (1 CRISPR, 1 questionable structure)
Eubacterium siraeum 70/3     (2 CRISPRs, 3 questionable structures)
Ruminococcus bromii L2-63
Faecalibacterium prausnitzii SL3/3     (1 CRISPR)
Ruminococcus sp. SR1/5
Butyrivibrio fibrisolvens 16/4     (1 CRISPR)
Rhodanobacter sp. 2APBS1
Bacillus sp. 1NLA3E     (3 questionable structures)
Hyphomicrobium denitrificans 1NES1     (1 questionable structure)
Arthrospira platensis NIES-39     (8 CRISPRs, 10 questionable structures)
Clostridium difficile BI9     (14 CRISPRs, 1 questionable structure)
Clostridium difficile M68     (13 CRISPRs, 6 questionable structures)
Clostridium cf. saccharolyticum K10     (1 CRISPR, 3 questionable structures)
Alistipes shahii WAL 8301     (1 CRISPR, 2 questionable structures)
[Eubacterium] cylindroides T2-87     (2 questionable structures)
Coprococcus catus GD/7     (2 CRISPRs, 1 questionable structure)
Faecalibacterium prausnitzii L2-6     (1 CRISPR, 1 questionable structure)
Enterobacter cloacae subsp. cloacae NCTC 9394     (1 CRISPR)
Roseburia intestinalis XB6B4
Sphingomonas sp. MM-1
Azoarcus sp. KH32C
Coprococcus sp. ART55/1     (1 CRISPR)
Burkholderia sp. RPE64     (2 CRISPRs)
Bacillus licheniformis 9945A
Lactobacillus fermentum F-6     (1 CRISPR)
Lactobacillus plantarum subsp. plantarum P-8     (2 questionable structures)
Desulfotomaculum gibsoniae DSM 7213     (6 CRISPRs, 4 questionable structures)
Mycoplasma mycoides subsp. mycoides SC str. Gladysdale
Streptococcus pneumoniae SPN034156
Streptococcus pneumoniae SPN034183
Streptococcus pneumoniae SPN994038
Streptococcus pneumoniae SPN994039
Streptococcus pneumoniae SPN032672
Streptococcus pneumoniae SPN033038
Acinetobacter baumannii MDR-TJ
Acinetobacter baumannii D1279779     (1 questionable structure)
Strawberry lethal yellows phytoplasma (CPA) str. NZSb11
Agromonas oligotrophica S58
Corynebacterium urealyticum DSM 7111     (1 CRISPR, 1 questionable structure)
Mycobacterium liflandii 128FXT     (1 questionable structure)
Clostridium saccharoperbutylacetonicum N1-4(HMT)     (4 CRISPRs, 6 questionable structures)
Lactococcus lactis subsp. lactis IO-1
Blattabacterium sp. (Blatta orientalis) str. Tarazona
Bacillus amyloliquefaciens IT-45
Bartonella australis Aust/NH1
Bartonella vinsonii subsp. berkhoffii str. Winnie
Corynebacterium halotolerans YIM 70093 = DSM 44683     (2 questionable structures)
Desulfocapsa sulfexigens DSM 10523     (1 CRISPR)
Dehalococcoides mccartyi DCMB5     (2 CRISPRs)
Staphylococcus warneri SG1     (1 questionable structure)
Mycobacterium bovis BCG str. Korea 1168P     (2 CRISPRs, 1 questionable structure)
Geobacillus sp. GHH01     (5 CRISPRs)
Escherichia coli APEC O78     (2 CRISPRs, 1 questionable structure)
Pseudomonas poae RE*1-1-14     (3 questionable structures)
Candidatus Cloacamonas acidaminovorans str. Evry     (4 CRISPRs, 9 questionable structures)
uncultured Termite group 1 bacterium phylotype Rs-D17     (2 CRISPRs)
Chlamydophila psittaci Mat116
Hydrogenobaculum sp. HO     (7 CRISPRs, 1 questionable structure)
Desulfovibrio piezophilus
Enterobacter aerogenes EA1509E     (1 questionable structure)
Cronobacter sakazakii SP291     (3 CRISPRs, 10 questionable structures)
Lactococcus lactis subsp. cremoris UC509.9
Bacillus amyloliquefaciens subsp. plantarum UCMB5036
Dehalococcoides mccartyi BTF08
Candidatus Kinetoplastibacterium crithidii TCC036E
Candidatus Kinetoplastibacterium desouzaii TCC079E
Candidatus Kinetoplastibacterium oncopeltii TCC290E
Candidatus Kinetoplastibacterium galatii TCC219
Candidatus Kinetoplastibacterium blastocrithidii TCC012E
Bacillus subtilis XF-1
Anabaena cylindrica PCC 7122     (13 CRISPRs, 9 questionable structures)
beta proteobacterium CB
Brachyspira pilosicoli P43/6/78
Leptolyngbya sp. PCC 7376     (3 questionable structures)
Fibrella aestuarina BUZ 2
Chamaesiphon minutus PCC 6605     (2 CRISPRs, 13 questionable structures)
Saccharothrix espanaensis DSM 44229     (4 CRISPRs, 5 questionable structures)
Pleurocapsa sp. PCC 7327     (4 CRISPRs, 4 questionable structures)
Mycobacterium canettii CIPT 140070008     (1 CRISPR, 2 questionable structures)
Mycobacterium canettii CIPT 140060008     (1 CRISPR, 2 questionable structures)
Bacillus thuringiensis HD-789     (4 questionable structures)
Myxococcus stipitatus DSM 14675     (5 CRISPRs, 2 questionable structures)
Oscillatoria nigro-viridis PCC 7112     (10 CRISPRs, 21 questionable structures)
Chroococcidiopsis thermalis PCC 7203     (2 CRISPRs, 8 questionable structures)
Helicobacter pylori Aklavik117     (1 questionable structure)
Helicobacter pylori Aklavik86
Bdellovibrio bacteriovorus str. Tiberius     (1 questionable structure)
Stanieria cyanosphaera PCC 7437     (5 CRISPRs, 2 questionable structures)
Mycoplasma hyorhinis SK76
Desulfovibrio hydrothermalis AM13 = DSM 14728     (6 CRISPRs)
Candidatus Uzinura diaspidicola str. ASNER
Brachyspira pilosicoli WesB
Calothrix sp. PCC 6303     (7 CRISPRs, 5 questionable structures)
Crinalium epipsammum PCC 9333     (8 CRISPRs, 4 questionable structures)
Geitlerinema sp. PCC 7407     (1 CRISPR, 3 questionable structures)
Gloeocapsa sp. PCC 7428     (3 CRISPRs, 3 questionable structures)
Microcoleus sp. PCC 7113     (13 CRISPRs, 11 questionable structures)
Synechococcus sp. PCC 7502     (1 CRISPR, 1 questionable structure)
Bacillus subtilis subsp. subtilis str. BSP1
Candidatus Endolissoclinum patella L2
Bacillus subtilis BEST7613
Mycobacterium canettii CIPT 140070010     (2 CRISPRs, 3 questionable structures)
Mycobacterium canettii CIPT 140070017     (2 CRISPRs, 5 questionable structures)
Pseudomonas sp. UW4
Candidatus Kinetoplastibacterium blastocrithidii (ex Strigomonas culicis)
Tepidanaerobacter acetatoxydans Re1     (5 CRISPRs, 2 questionable structures)
Vibrio parahaemolyticus BB22OP     (1 CRISPR)
Liberibacter crescens BT-1     (2 questionable structures)
Bacillus amyloliquefaciens subsp. plantarum AS43.3
Listeria monocytogenes serotype 4b str. LL195
Francisella tularensis subsp. holarctica F92
Lawsonia intracellularis N343     (1 questionable structure)
Candidatus Blochmannia chromaiodes str. 640
Mycoplasma cynos C142     (1 CRISPR)
Serratia marcescens FGI94     (4 CRISPRs)
Thioalkalivibrio nitratireducens DSM 14787     (6 CRISPRs, 3 questionable structures)
Enterococcus faecalis str. Symbioflor 1     (1 CRISPR, 1 questionable structure)
Candidatus Kinetoplastibacterium crithidii (ex Angomonas deanei ATCC 30255)
Riemerella anatipestifer RA-CH-2     (2 CRISPRs)
Dactylococcopsis salina PCC 8305     (17 questionable structures)
Lactobacillus casei
Synechococcus sp. PCC 6312     (3 CRISPRs)
Nostoc sp. PCC 7524     (6 CRISPRs, 6 questionable structures)
Cyanobacterium stanieri PCC 7202     (2 CRISPRs)
Cyanobium gracile PCC 6307
Nostoc sp. PCC 7107     (18 CRISPRs, 5 questionable structures)
Francisella tularensis subsp. holarctica FSC200
Rivularia sp. PCC 7116     (16 CRISPRs, 8 questionable structures)
Cylindrospermum stagnale PCC 7417     (11 CRISPRs, 15 questionable structures)
Oscillatoria acuminata PCC 6304     (19 CRISPRs, 32 questionable structures)
Nonlabens dokdonensis DSW-6     (3 questionable structures)
Pseudomonas stutzeri RCH2
Bacillus subtilis subsp. natto BEST195
Halothece sp. PCC 7418     (4 CRISPRs, 4 questionable structures)
Enterobacteriaceae bacterium strain FGI 57     (1 CRISPR, 3 questionable structures)
Rhizobium tropici CIAT 899
Thermoanaerobacterium thermosaccharolyticum M0795     (4 CRISPRs)
Mycobacterium smegmatis JS623     (1 CRISPR, 2 questionable structures)
Thermobacillus composti KWC4     (11 CRISPRs, 3 questionable structures)
Halobacteroides halobius DSM 5150     (2 CRISPRs)
Mesorhizobium australicum WSM2073
Cyanobacterium aponinum PCC 10605     (10 CRISPRs)
Thioflavicoccus mobilis 8321     (4 CRISPRs, 1 questionable structure)
Bacteroides uniformis
Pseudanabaena sp. PCC 7367     (9 CRISPRs)
Desulfitobacterium dichloroeliminans LMG P-21439
Singulisphaera acidiphila DSM 18658     (7 CRISPRs, 4 questionable structures)
Prevotella dentalis DSM 3688     (1 CRISPR, 3 questionable structures)
Echinicola vietnamensis DSM 17526
Deinococcus peraridilitoris DSM 19664
Calothrix sp. PCC 7507     (10 CRISPRs, 8 questionable structures)
Mycoplasma gallisepticum NC96_1596-4-2P     (2 CRISPRs)
Mycoplasma gallisepticum CA06_2006.052-5-2P     (2 CRISPRs)
Mycoplasma gallisepticum NC08_2008.031-4-3P     (2 CRISPRs)
Nocardiopsis alba ATCC BAA-2165     (27 CRISPRs, 2 questionable structures)
Bordetella bronchiseptica MO149     (1 questionable structure)
Bacillus cereus FRI-35     (2 CRISPRs, 1 questionable structure)
Pectobacterium carotovorum subsp. carotovorum PCC21     (4 CRISPRs, 1 questionable structure)
Staphylococcus aureus 08BA02176     (1 CRISPR, 7 questionable structures)
Burkholderia pseudomallei BPC006
Helicobacter pylori Rif1     (1 questionable structure)
Helicobacter pylori Rif2     (1 questionable structure)
Candidatus Nitrososphaera gargensis Ga9.2     (1 CRISPR)
Bacillus thuringiensis Bt407     (1 questionable structure)
Bordetella bronchiseptica 253     (3 questionable structures)
Actinobacillus suis H91-0380     (1 CRISPR, 1 questionable structure)
Helicobacter pylori 26695     (2 questionable structures)
Listeria monocytogenes SLCC2540     (1 CRISPR, 1 questionable structure)
Alteromonas macleodii str. 'Black Sea 11'     (1 questionable structure)
Alteromonas macleodii str. 'English Channel 673'     (1 questionable structure)
Leptospirillum ferriphilum ML-04     (1 questionable structure)
Lactobacillus buchneri CD034     (5 CRISPRs)
Exiguobacterium antarcticum B7
Thermacetogenium phaeum DSM 12270     (11 CRISPRs, 1 questionable structure)
Simiduia agarivorans SA1 = DSM 21679     (1 questionable structure)
Arthrobacter sp. Rue61a
Clostridium acidurici 9a     (3 CRISPRs)
Brachyspira pilosicoli B2904     (1 questionable structure)
Nocardia brasiliensis ATCC 700358     (3 questionable structures)
Escherichia coli O104:H4 str. 2011C-3493     (2 CRISPRs, 1 questionable structure)
Escherichia coli O104:H4 str. 2009EL-2071     (2 CRISPRs, 1 questionable structure)
Escherichia coli O104:H4 str. 2009EL-2050     (2 CRISPRs, 1 questionable structure)
Bifidobacterium asteroides PRL2011     (1 CRISPR)
Propionibacterium acidipropionici ATCC 4875     (3 CRISPRs, 8 questionable structures)
Streptococcus suis S735     (3 questionable structures)
Klebsiella pneumoniae subsp. pneumoniae 1084     (2 CRISPRs)
Bacillus thuringiensis MC28     (3 questionable structures)
Campylobacter jejuni subsp. jejuni PT14     (1 CRISPR, 1 questionable structure)
Streptococcus agalactiae GD201008-001     (1 CRISPR)
Candidatus Portiera aleyrodidarum BT-B     (2 questionable structures)
Bordetella parapertussis Bpp5     (3 questionable structures)
Campylobacter jejuni subsp. jejuni NCTC 11168-BN148     (1 CRISPR, 1 questionable structure)
Candidatus Mycoplasma haemolamae str. Purdue     (1 questionable structure)
Lactobacillus casei W56     (1 CRISPR)
Bacillus thuringiensis HD-771     (4 questionable structures)
Chlamydia psittaci WC
Bacillus subtilis QB928
Gluconobacter oxydans H24     (2 CRISPRs)
Riemerella anatipestifer RA-CH-1     (1 CRISPR)
Leuconostoc gelidum JB7     (1 CRISPR)
Leuconostoc carnosum JB16
Candidatus Nitrosopumilus koreensis AR1     (1 questionable structure)
Candidatus Nitrosopumilus sp. AR2
Sinorhizobium meliloti Rm41     (1 questionable structure)
Streptococcus agalactiae SA20-06     (1 CRISPR)
Mycobacterium indicus pranii MTCC 9506     (4 questionable structures)
Propionibacterium acnes C1     (1 questionable structure)
Borrelia garinii NMJW1
Carnobacterium maltaromaticum LMA28     (2 questionable structures)
Streptococcus pyogenes A20     (2 CRISPRs)
Candidatus Portiera aleyrodidarum BT-QVLC     (2 questionable structures)
Methylocystis sp. SC2
Pseudomonas putida ND6
Psychroflexus torquis ATCC 700755     (3 CRISPRs, 1 questionable structure)
Gordonia sp. KTR9     (2 questionable structures)
Thiomonas sp. 3As     (1 questionable structure)
Anabaena sp. 90     (2 CRISPRs, 8 questionable structures)
Marinobacter sp. BSs20148     (1 questionable structure)
Alteromonas macleodii ATCC 27126
Bordetella pertussis 18323     (1 questionable structure)
Streptococcus dysgalactiae subsp. equisimilis RE378     (2 CRISPRs, 2 questionable structures)
Desulfobacula toluolica Tol2     (3 CRISPRs, 1 questionable structure)
Streptococcus pneumoniae gamPNI0373     (1 questionable structure)
Thermus oshimai JL-2     (6 CRISPRs)
Streptococcus dysgalactiae subsp. equisimilis AC-2713     (3 CRISPRs)
Listeria monocytogenes serotype 7 str. SLCC2482     (2 CRISPRs, 1 questionable structure)
Streptococcus pneumoniae SPNA45
Listeria monocytogenes SLCC7179     (1 CRISPR)
Lactobacillus helveticus R0052     (1 CRISPR, 1 questionable structure)
Listeria monocytogenes SLCC2479     (1 CRISPR, 2 questionable structures)
Listeria monocytogenes L312     (1 CRISPR)
Listeria monocytogenes ATCC 19117     (1 questionable structure)
Listeria monocytogenes SLCC5850     (2 CRISPRs, 2 questionable structures)
Listeria monocytogenes SLCC2376     (1 CRISPR, 1 questionable structure)
Emticicia oligotrophica DSM 17448     (4 questionable structures)
Alcanivorax dieselolei B5     (1 CRISPR, 3 questionable structures)
Listeria monocytogenes SLCC2755     (2 CRISPRs, 1 questionable structure)
Listeria monocytogenes SLCC2372     (1 CRISPR, 2 questionable structures)
Clostridium botulinum B str. Eklund 17B(NRP)     (1 CRISPR, 1 questionable structure)
Streptomyces venezuelae ATCC 10712     (6 questionable structures)
Alteromonas macleodii AltDE1
Alteromonas macleodii str. 'Balearic Sea AD45'
Flavobacterium branchiophilum FL-15     (6 CRISPRs, 4 questionable structures)
Chlamydia psittaci CP3
Chlamydia psittaci NJ1
Acinetobacter baumannii TYTH-1
Thermoanaerobacterium phage THSA-485A
Dehalobacter sp. CF
Staphylococcus aureus PM1
Dehalobacter sp. DCA
Sinorhizobium fredii USDA 257     (2 questionable structures)
Enterobacter cloacae subsp. cloacae ENHKU01
Chlamydia psittaci 84/55
Chlamydia psittaci GR9
Chlamydia psittaci MN
Chlamydia psittaci VS225
Chlamydia psittaci WS/RT/E30
Chlamydia psittaci M56
Chlamydia psittaci 01DC12
Bartonella quintana RM-11
Burkholderia phenoliruptrix BR3459a
Cardinium endosymbiont cEper1 of Encarsia pergandiella
Borrelia afzelii HLJ01
Staphylococcus aureus
secondary endosymbiont of Heteropsylla cubana
Lactobacillus buchneri
Acidovorax sp. KKS102
Cycloclasticus sp. P1
Staphylococcus aureus subsp. aureus
Bordetella parapertussis
Treponema pallidum subsp. pallidum str. Mexico A
Amphibacillus xylanus NBRC 15112
alpha proteobacterium HIMB59
alpha proteobacterium HIMB5
Bacteriovorax marinus SJ
Listeria monocytogenes SLCC2378
Chlamydophila psittaci RD1
Mycoplasma gallisepticum VA94_7994-1-7P     (2 CRISPRs)
Mycoplasma gallisepticum NC95_13295-2-2P     (2 CRISPRs)
Mycoplasma gallisepticum NY01_2001.047-5-1P     (2 CRISPRs)
Burkholderia cepacia GG4     (2 questionable structures)
Mycoplasma gallisepticum NC06_2006.080-5-2P     (2 CRISPRs)
Enterococcus faecalis D32     (2 CRISPRs, 1 questionable structure)
Modestobacter marinus     (1 questionable structure)
Taylorella equigenitalis ATCC 35865     (1 CRISPR)
Wolbachia endosymbiont of Onchocerca ochengi
Streptococcus phage YMC-2011
Chlamydia trachomatis E/SW3
Chlamydia trachomatis F/SW4
Chlamydia trachomatis F/SW5
Melissococcus plutonius DAT561     (1 CRISPR, 1 questionable structure)
Sinorhizobium fredii HH103
Pseudomonas stutzeri DSM 10701
Mycoplasma gallisepticum WI01_2001.043-13-2P     (2 CRISPRs)
Chlamydia phage CPAR39
Melioribacter roseus P3M     (3 CRISPRs)
Pseudomonas putida DOT-T1E     (1 questionable structure)
Pseudomonas stutzeri CCUG 29243
Mycoplasma wenyonii str. Massachusetts
Mycobacterium massiliense str. GO 06     (1 questionable structure)
Streptococcus mutans GS-5     (3 CRISPRs)
secondary endosymbiont of Ctenarytaina eucalypti
Candidatus Carsonella ruddii CE isolate Thao2000
Candidatus Carsonella ruddii CS isolate Thao2000
Candidatus Carsonella ruddii HC isolate Thao2000
Candidatus Carsonella ruddii HT isolate Thao2000
Candidatus Carsonella ruddii PC isolate NHV
Mycobacterium smegmatis str. MC2 155
Phaeobacter gallaeciensis 2.10
Phaeobacter gallaeciensis DSM 17395
Zymomonas mobilis subsp. mobilis ATCC 29191     (3 CRISPRs)
Mycoplasma genitalium M6320
Mycoplasma genitalium M6282
Mycoplasma genitalium M2288
Mycoplasma genitalium M2321
Amycolatopsis mediterranei S699     (9 CRISPRs, 14 questionable structures)
Propionibacterium propionicum F0230a     (2 CRISPRs, 3 questionable structures)
Desulfosporosinus meridiei DSM 13257
Mycobacterium tuberculosis H37Rv     (4 CRISPRs, 2 questionable structures)
Legionella pneumophila subsp. pneumophila
Corynebacterium ulcerans 0102     (3 CRISPRs)
Azospirillum brasilense Sp245
Mycobacterium tuberculosis UT205     (4 CRISPRs, 1 questionable structure)
Corynebacterium pseudotuberculosis Cp162
Enterococcus faecium DO
Mycobacterium chubuense NBB4     (1 questionable structure)
Mycoplasma leachii 99/014/6     (1 questionable structure)
Flexibacter litoralis DSM 6794     (3 CRISPRs)
Solibacillus silvestris StLB046     (1 questionable structure)
Streptococcus suis ST1
Pseudomonas aeruginosa DK2     (3 CRISPRs)
Thermoanaerobacterium saccharolyticum JW/SL-YS485     (7 CRISPRs, 1 questionable structure)
Tistrella mobilis KA081020-065     (8 CRISPRs, 1 questionable structure)
Streptococcus parasanguinis FW213     (1 questionable structure)
Helicobacter pylori XZ274     (1 CRISPR)
Cronobacter sakazakii ES15     (3 CRISPRs, 7 questionable structures)
Mycobacterium sp. MOTT36Y     (2 questionable structures)
Corynebacterium pseudotuberculosis 258     (1 questionable structure)
Blattabacterium sp. (Blaberus giganteus)
Streptococcus thermophilus MN-ZLW-002     (3 CRISPRs)
Escherichia coli str. K-12 substr. W3110     (2 CRISPRs, 2 questionable structures)
Burkholderia sp. KJ006     (2 questionable structures)
Mycobacterium tuberculosis KZN 605     (2 CRISPRs, 2 questionable structures)
Bifidobacterium bifidum BGN4
Mycobacterium intracellulare ATCC 13950     (3 questionable structures)
Escherichia blattae DSM 4481     (1 CRISPR)
Erwinia pyrifoliae DSM 12163     (5 CRISPRs, 1 questionable structure)
Desulfosporosinus acidiphilus SJ4     (1 CRISPR)
Mesotoga prima MesG1.Ag.4.2     (8 CRISPRs, 2 questionable structures)
Candidatus Methylomirabilis oxyfera     (1 CRISPR, 1 questionable structure)
Alistipes finegoldii DSM 17242     (3 questionable structures)
Desulfomonile tiedjei DSM 6799     (2 CRISPRs)
Edwardsiella tarda FL6-60
Escherichia coli Xuzhou21     (2 CRISPRs)
Lactococcus lactis subsp. cremoris NZ9000
Aequorivita sublithincola DSM 14238     (1 questionable structure)
Desulfitobacterium dehalogenans ATCC 51507     (1 CRISPR, 1 questionable structure)
Sulfurospirillum barnesii SES-3     (1 CRISPR)
Thiocystis violascens DSM 198     (4 CRISPRs, 5 questionable structures)
Mycoplasma bovis HB0801
Enterococcus hirae ATCC 9790     (1 CRISPR)
Belliella baltica DSM 15883     (1 CRISPR)
Ornithobacterium rhinotracheale DSM 15997     (2 CRISPRs, 1 questionable structure)
Turneriella parva DSM 21527     (3 questionable structures)
Anaerobaculum mobile DSM 13181     (3 CRISPRs)
Terriglobus roseus DSM 18391     (1 questionable structure)
Advenella kashmirensis WT001
Enterobacter cloacae subsp. dissolvens SDM
Bacillus amyloliquefaciens Y2
Enterococcus faecium Aus0004
Francisella noatunensis subsp. orientalis str. Toba 04
Streptococcus intermedius JTH08
Streptococcus salivarius 57.I     (1 CRISPR, 2 questionable structures)
Streptomyces hygroscopicus subsp. jinggangensis 5008     (9 CRISPRs, 4 questionable structures)
Borrelia crocidurae str. Achema     (1 questionable structure)
Helicobacter pylori Shi417     (1 CRISPR)
Helicobacter pylori Shi112     (1 CRISPR)
Actinoplanes sp. SE50/110     (5 questionable structures)
Streptococcus suis GZ1     (1 questionable structure)
Borrelia burgdorferi N40
Leptospira interrogans serovar Lai str. IPAV     (7 CRISPRs, 2 questionable structures)
Geobacter sulfurreducens KN400     (1 CRISPR)
Mycobacterium tuberculosis CTRI-2     (3 CRISPRs, 1 questionable structure)
Neisseria gonorrhoeae TCDC-NG08107     (1 CRISPR, 5 questionable structures)
Streptomyces cattleya NRRL 8057     (2 CRISPRs, 8 questionable structures)
Streptococcus suis D12     (1 CRISPR, 3 questionable structures)
Streptococcus suis SS12
Streptococcus suis D9
Staphylococcus aureus subsp. aureus T0131     (1 CRISPR, 4 questionable structures)
Gardnerella vaginalis HMP9231
Streptococcus pyogenes MGAS1882     (1 CRISPR)
Helicobacter pylori F32
Chlamydophila psittaci 08DC60
Chlamydophila psittaci C19/98
Chlamydophila psittaci 02DC15
Chlamydophila psittaci 01DC11
Brucella melitensis NI     (1 questionable structure)
Listeria monocytogenes M7     (2 CRISPRs)
Propionibacterium acnes 6609
Oligotropha carboxidovorans OM4
Ralstonia solanacearum Po82     (2 CRISPRs)
Escherichia coli NA114     (1 CRISPR, 9 questionable structures)
Staphylococcus lugdunensis N920143     (1 CRISPR, 4 questionable structures)
Rhodospirillum rubrum F11     (12 CRISPRs, 2 questionable structures)
Candidatus Arthromitus sp. SFB-mouse-Yit     (3 CRISPRs)
Escherichia coli O55:H7 str. RM12579     (2 CRISPRs)
Klebsiella pneumoniae KCTC 2242     (1 questionable structure)
Streptococcus equi subsp. zooepidemicus ATCC 35246     (1 CRISPR)
Streptococcus thermophilus JIM 8232     (3 CRISPRs)
Paenibacillus polymyxa M1
Candidatus Tremblaya princeps PCVAL
Helicobacter pylori Puno120
Helicobacter pylori Puno135
Helicobacter pylori SNT49     (1 CRISPR)
Escherichia coli O7:K1 str. CE10     (1 CRISPR)
Staphylococcus aureus subsp. aureus HO 5096 0412     (1 CRISPR, 4 questionable structures)
Borrelia garinii BgVir
Corynebacterium pseudotuberculosis 31
Corynebacterium pseudotuberculosis 42/02-A     (1 CRISPR)
Corynebacterium pseudotuberculosis 1/06-A     (1 CRISPR, 1 questionable structure)
Lactobacillus rhamnosus ATCC 8530     (1 questionable structure)
Corynebacterium pseudotuberculosis 267     (1 CRISPR)
Pseudomonas aeruginosa NCGM2.S1     (1 questionable structure)
Propionibacterium acnes ATCC 11828
Mycobacterium tuberculosis RGTB423     (3 CRISPRs, 3 questionable structures)
Pantoea ananatis PA13     (1 CRISPR)
Lactococcus lactis subsp. cremoris A76
Thermus sp. CCB_US3_UF1     (8 CRISPRs)
Staphylococcus aureus subsp. aureus 11819-97     (6 questionable structures)
Pantoea ananatis LMG 5342     (1 CRISPR)
Listeria monocytogenes 07PF0776
Bacillus sp. JS
Streptococcus pneumoniae ST556     (2 questionable structures)
Rahnella aquatilis HX2     (1 CRISPR, 2 questionable structures)
Streptococcus mutans LJ23     (2 CRISPRs)
Staphylococcus aureus subsp. aureus S0385     (1 CRISPR, 5 questionable structures)
Staphylococcus aureus subsp. aureus 71193     (1 CRISPR, 6 questionable structures)
Bacillus amyloliquefaciens subsp. plantarum YAU B9601-Y2
Providencia stuartii MRSN 2154     (3 CRISPRs, 4 questionable structures)
Salmonella enterica subsp. enterica serovar Heidelberg str. B182     (3 CRISPRs)
Stenotrophomonas maltophilia D457
Helicobacter pylori Shi169     (1 CRISPR, 1 questionable structure)
Helicobacter pylori PeCan18
Helicobacter pylori HUP-B14     (1 questionable structure)
Helicobacter cetorum MIT 99-5656
Marinobacter hydrocarbonoclasticus ATCC 49840
Bifidobacterium animalis subsp. lactis B420     (2 CRISPRs, 1 questionable structure)
Helicobacter cinaedi PAGU611     (2 CRISPRs)
Helicobacter cetorum MIT 00-7128     (1 CRISPR)
Erwinia sp. Ejp617     (4 CRISPRs, 2 questionable structures)
Escherichia coli 042     (2 CRISPRs, 3 questionable structures)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344     (3 CRISPRs)
Marinobacter adhaerens HP15
Prevotella intermedia 17     (2 CRISPRs)
Haemophilus influenzae R2846
Haemophilus influenzae R2866     (2 questionable structures)
Helicobacter pylori 51     (1 CRISPR)
Xanthomonas albilineans     (6 CRISPRs)
Escherichia coli ETEC H10407     (2 CRISPRs, 4 questionable structures)
Chlamydophila psittaci 6BC
Streptococcus salivarius JIM8777     (1 CRISPR)
Lactobacillus delbrueckii subsp. bulgaricus 2038     (1 CRISPR, 2 questionable structures)
Xanthomonas oryzae pv. oryzicola BLS256
Listeria monocytogenes FSL R2-561     (1 CRISPR, 2 questionable structures)
Listeria monocytogenes Finland 1998     (2 CRISPRs, 2 questionable structures)
Listeria monocytogenes J0161     (3 CRISPRs, 1 questionable structure)
Listeria monocytogenes 10403S     (2 CRISPRs, 2 questionable structures)
Shewanella putrefaciens 200     (3 CRISPRs)
Chlamydophila pneumoniae LPCoLN
Lactococcus garvieae Lg2     (1 questionable structure)
Escherichia coli SE15     (1 CRISPR, 1 questionable structure)
Mycobacterium tuberculosis CCDC5180     (1 CRISPR, 1 questionable structure)
Rickettsia prowazekii Rp22
Escherichia coli BL21(DE3)     (6 CRISPRs, 8 questionable structures)
Enterococcus faecalis OG1RF     (2 CRISPRs, 1 questionable structure)
Streptococcus pyogenes Alab49
Francisella tularensis subsp. tularensis NE061598
Borrelia burgdorferi JD1
Staphylococcus aureus subsp. aureus ST398
Escherichia coli DH1     (4 CRISPRs, 5 questionable structures)
Staphylococcus aureus subsp. aureus str. JKD6008     (7 questionable structures)
Yersinia pestis biovar Medievalis str. Harbin 35     (3 CRISPRs, 1 questionable structure)
Staphylococcus aureus subsp. aureus TCH60     (7 questionable structures)
Zymomonas mobilis subsp. mobilis ATCC 10988     (3 CRISPRs, 1 questionable structure)
Listeria monocytogenes L99     (2 CRISPRs)
Escherichia coli W     (4 CRISPRs, 2 questionable structures)
Campylobacter jejuni subsp. jejuni IA3902     (1 CRISPR, 1 questionable structure)
Lactobacillus rhamnosus GG     (2 CRISPRs, 2 questionable structures)
Halanaerobium praevalens DSM 2228     (1 CRISPR)
Desulfovibrio vulgaris RCH1     (1 CRISPR, 1 questionable structure)
Chlamydia trachomatis A2497
Pasteurella multocida subsp. multocida str. 3480     (2 CRISPRs)
Helicobacter pylori 35A
Helicobacter pylori 83     (2 CRISPRs, 2 questionable structures)
Shigella flexneri 2002017     (1 CRISPR, 1 questionable structure)
Fibrobacter succinogenes subsp. succinogenes S85     (29 CRISPRs)
Escherichia coli KO11FL     (4 CRISPRs, 8 questionable structures)
Neisseria meningitidis 8013     (8 CRISPRs, 4 questionable structures)
Neisseria meningitidis alpha710     (4 CRISPRs, 3 questionable structures)
Chlamydia trachomatis Sweden2
Clostridium thermocellum DSM 1313     (5 CRISPRs)
Helicobacter pylori v225d     (2 questionable structures)
Campylobacter jejuni subsp. jejuni M1     (1 CRISPR, 1 questionable structure)
Escherichia coli ABU 83972     (3 questionable structures)
Staphylococcus aureus subsp. aureus TW20     (1 CRISPR, 3 questionable structures)
Streptococcus dysgalactiae subsp. equisimilis ATCC 12394     (2 CRISPRs)
Treponema pallidum subsp. pallidum str. Chicago
Pseudonocardia dioxanivorans CB1190     (6 questionable structures)
Francisella cf. novicida 3523     (2 CRISPRs)
Corynebacterium pseudotuberculosis 1002     (1 CRISPR)
Corynebacterium pseudotuberculosis C231     (1 CRISPR)
Helicobacter pylori 52     (1 questionable structure)
Escherichia coli O83:H1 str. NRG 857C     (2 CRISPRs, 2 questionable structures)
Staphylococcus aureus subsp. aureus ED133     (1 CRISPR, 6 questionable structures)
Shewanella baltica OS117     (1 CRISPR, 4 questionable structures)
Shewanella baltica BA175
Aggregatibacter actinomycetemcomitans D7S-1     (3 CRISPRs)
Lactobacillus amylovorus GRL1118     (3 CRISPRs)
Escherichia coli UMNK88     (2 CRISPRs, 2 questionable structures)
Sinorhizobium meliloti BL225C     (1 questionable structure)
Staphylococcus aureus 04-02981     (2 CRISPRs, 7 questionable structures)
Bifidobacterium animalis subsp. animalis ATCC 25527     (2 CRISPRs, 1 questionable structure)
Chlamydia trachomatis E/11023
Chlamydia trachomatis E/150
Chlamydia trachomatis G/9768
Chlamydia trachomatis G/11222
Chlamydia trachomatis G/11074
Sinorhizobium meliloti SM11     (1 questionable structure)
Mycoplasma gallisepticum str. F     (1 CRISPR)
Mycoplasma gallisepticum str. R(high)     (2 CRISPRs, 2 questionable structures)
Lactobacillus fermentum CECT 5716     (2 CRISPRs, 2 questionable structures)
Lactobacillus salivarius CECT 5713     (1 CRISPR, 1 questionable structure)
Escherichia coli IHE3034     (2 CRISPRs, 3 questionable structures)
Chlamydia trachomatis G/9301
Campylobacter jejuni subsp. jejuni S3     (1 CRISPR, 1 questionable structure)
Mycoplasma pneumoniae FH     (2 questionable structures)
Bifidobacterium animalis subsp. lactis Bi-07     (2 CRISPRs, 1 questionable structure)
Deinococcus gobiensis I-0     (4 CRISPRs, 2 questionable structures)
Methylophaga sp. JAM1     (1 CRISPR)
Methylophaga sp. JAM7     (1 CRISPR, 2 questionable structures)
Clostridium botulinum F str. 230613     (13 CRISPRs)
Ketogulonigenium vulgarum WSH-001     (1 CRISPR)
Chlamydia trachomatis D-EC
Chlamydia trachomatis D-LC
Thermus thermophilus SG0.5JP17-16     (6 CRISPRs, 1 questionable structure)
Helicobacter pylori Cuz20     (1 CRISPR)
Lactobacillus helveticus H10     (2 CRISPRs, 1 questionable structure)
Streptococcus thermophilus ND03     (3 CRISPRs)
Serratia sp. AS13     (1 CRISPR, 1 questionable structure)
Bacillus anthracis str. H9401     (1 CRISPR, 1 questionable structure)
Xylella fastidiosa subsp. fastidiosa GB514     (1 questionable structure)
Helicobacter pylori Sat464
Thermus thermophilus JL-18     (6 CRISPRs)
Mycoplasma haemofelis Ohio2
Ralstonia solanacearum CFBP2957     (2 CRISPRs, 1 questionable structure)
Ralstonia solanacearum PSI07     (2 questionable structures)
Clostridium acetobutylicum EA 2018     (2 questionable structures)
Helicobacter pylori F16     (2 questionable structures)
Helicobacter pylori F30     (2 CRISPRs)
Helicobacter pylori F57     (2 CRISPRs)
Halobacillus halophilus DSM 2266
Spirochaeta thermophila DSM 6578     (2 CRISPRs)
Streptococcus pneumoniae OXC141
Streptococcus pneumoniae INV200
Streptococcus pneumoniae INV104
Helicobacter pylori 908     (1 CRISPR, 1 questionable structure)
Escherichia coli UM146     (2 CRISPRs, 2 questionable structures)
Staphylococcus aureus subsp. aureus JKD6159     (5 questionable structures)
Burkholderia pseudomallei 1026b
Escherichia coli str. 'clone D i14'     (2 questionable structures)
Escherichia coli str. 'clone D i2'     (2 questionable structures)
Corynebacterium pseudotuberculosis I19     (1 CRISPR)
Staphylococcus aureus subsp. aureus ECT-R 2     (2 CRISPRs, 5 questionable structures)
Helicobacter pylori Lithuania75     (1 questionable structure)
Helicobacter pylori India7     (1 CRISPR)
Helicobacter pylori SouthAfrica7     (2 questionable structures)
Helicobacter pylori Gambia94/24     (1 CRISPR, 1 questionable structure)
Mycoplasma hyopneumoniae 168     (1 questionable structure)
Neisseria meningitidis H44/76     (5 CRISPRs, 4 questionable structures)
Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74     (3 CRISPRs)
Propionibacterium acnes 266     (1 questionable structure)
Lactobacillus johnsonii DPC 6026     (1 CRISPR)
Escherichia coli P12b     (2 CRISPRs, 4 questionable structures)
Lactococcus lactis subsp. lactis CV56
Solitalea canadensis DSM 3403     (4 questionable structures)
Yersinia enterocolitica subsp. palearctica Y11
Pseudomonas putida BIRD-1     (2 questionable structures)
Pantoea ananatis AJ13355     (1 CRISPR)
Vibrio cholerae LMA3984-4
Corynebacterium pseudotuberculosis PAT10     (1 CRISPR)
Neisseria meningitidis M01-240355     (6 CRISPRs, 2 questionable structures)
Neisseria meningitidis NZ-05/33     (2 CRISPRs, 3 questionable structures)
Neisseria meningitidis M01-240149     (3 CRISPRs, 4 questionable structures)
Neisseria meningitidis M04-240196     (10 CRISPRs, 4 questionable structures)
Neisseria meningitidis G2136     (6 CRISPRs, 3 questionable structures)
Corynebacterium pseudotuberculosis CIP 52.97
Mycoplasma hyorhinis MCLD
Enterococcus faecalis 62     (1 CRISPR, 2 questionable structures)
Pseudomonas aeruginosa M18     (3 CRISPRs)
Brucella melitensis M28     (1 questionable structure)
Clostridium botulinum H04402 065     (8 CRISPRs)
Neisseria meningitidis WUE 2594     (6 CRISPRs, 5 questionable structures)
Streptococcus suis JS14
Corynebacterium ulcerans 809     (3 CRISPRs)
Ignavibacterium album JCM 16511     (3 CRISPRs, 3 questionable structures)
Enterococcus phage EF62phi
Acinetobacter baumannii TCDC-AB0715
Streptococcus gallolyticus subsp. gallolyticus ATCC 43143     (2 CRISPRs)
Francisella cf. novicida Fx1     (2 CRISPRs)
Staphylococcus pseudintermedius ED99     (1 CRISPR)
Staphylococcus aureus subsp. aureus LGA251     (1 CRISPR, 4 questionable structures)
Helicobacter pylori 2018     (1 CRISPR, 1 questionable structure)
Helicobacter pylori 2017     (1 CRISPR, 1 questionable structure)
Xanthomonas campestris pv. raphani 756C     (2 CRISPRs)
Riemerella anatipestifer RA-GD     (3 CRISPRs)
Streptococcus suis A7     (1 questionable structure)
Pseudomonas stutzeri DSM 4166
Paenibacillus mucilaginosus K02     (4 CRISPRs, 10 questionable structures)
Lactobacillus casei BD-II     (1 CRISPR)
Lactobacillus casei LC2W     (1 CRISPR)
Bacillus megaterium WSH-002     (2 questionable structures)
Bifidobacterium animalis subsp. lactis CNCM I-2494     (1 CRISPR, 1 questionable structure)
Bifidobacterium animalis subsp. lactis BLC1     (1 CRISPR, 1 questionable structure)
Mycobacterium tuberculosis RGTB327     (3 CRISPRs, 1 questionable structure)
Rickettsia massiliae str. AZT80
Paenibacillus mucilaginosus 3016     (1 CRISPR, 10 questionable structures)
Phycisphaera mikurensis NBRC 102666     (1 CRISPR, 4 questionable structures)
Corallococcus coralloides DSM 2259     (7 CRISPRs, 9 questionable structures)
Bifidobacterium animalis subsp. lactis BB-12     (1 CRISPR, 1 questionable structure)
Bifidobacterium animalis subsp. lactis V9     (1 CRISPR, 1 questionable structure)
Clostridium difficile M120     (6 CRISPRs, 2 questionable structures)
Acetobacterium woodii DSM 1030     (1 CRISPR)
Arcobacter sp. L     (1 CRISPR)
Francisella tularensis TI0902
Francisella tularensis TIGB03
Bacillus amyloliquefaciens LL3
Rickettsia typhi str. TH1527
Rickettsia typhi str. B9991CWPP
Buchnera aphidicola str. Ua (Uroleucon ambrosiae)
Buchnera aphidicola str. Ak (Acyrthosiphon kondoi)
Salmonella enterica subsp. enterica serovar Typhimurium str. 798     (2 CRISPRs)
Bordetella pertussis CS     (1 questionable structure)
Staphylococcus aureus subsp. aureus VC40     (1 CRISPR, 2 questionable structures)
Bacillus amyloliquefaciens XH7
Yersinia pestis A1122     (3 CRISPRs, 1 questionable structure)
Bifidobacterium longum subsp. longum KACC 91563     (1 CRISPR, 2 questionable structures)
Bradyrhizobium japonicum USDA 6
Brachyspira intermedia PWS/A     (6 questionable structures)
Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1     (3 CRISPRs)
Bacillus subtilis subsp. subtilis RO-NN-1
Helicobacter pylori ELS37     (1 questionable structure)
Streptococcus infantarius subsp. infantarius CJ18     (1 CRISPR)
Corynebacterium pseudotuberculosis 316
Pasteurella multocida 36950     (2 CRISPRs)
Synechocystis sp. PCC 6803 substr. GT-I
Synechocystis sp. PCC 6803 substr. PCC-N
Synechocystis sp. PCC 6803 substr. PCC-P
Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078     (2 CRISPRs)
Flavobacterium indicum GPTSA100-9
Burkholderia sp. YI23     (4 CRISPRs, 3 questionable structures)
Rickettsia prowazekii str. Chernikova
Rickettsia prowazekii str. Katsinyian
Rickettsia prowazekii str. BuV67-CWPP
Rickettsia prowazekii str. Dachau
Rickettsia prowazekii str. GvV257
Rickettsia prowazekii str. RpGvF24
Rickettsia rickettsii str. Hino
Rickettsia rickettsii str. Hlp#2
Rickettsia rickettsii str. Colombia     (1 questionable structure)
Rickettsia rickettsii str. Hauke
Rickettsia rickettsii str. Brazil     (1 questionable structure)
Rickettsia rickettsii str. Arizona
Rickettsia canadensis str. CA410
Rickettsia parkeri str. Portsmouth
Rickettsia slovaca str. D-CWPP
Rickettsia australis str. Cutlack
Candidatus Rickettsia amblyommii str. GAT-30V     (1 questionable structure)
Rickettsia rhipicephali str. 3-7-female6-CWPP
Rickettsia montanensis str. OSU 85-930
Leuconostoc mesenteroides subsp. mesenteroides J18
Gordonia polyisoprenivorans VH2     (1 CRISPR, 3 questionable structures)
Mycoplasma pneumoniae 309     (2 questionable structures)
Pseudomonas fluorescens F113     (3 questionable structures)
Corynebacterium pseudotuberculosis P54B96     (1 CRISPR)
Staphylococcus aureus subsp. aureus M013     (1 CRISPR, 4 questionable structures)
Klebsiella pneumoniae subsp. pneumoniae HS11286     (1 questionable structure)
Nocardia cyriacigeorgica GUH-2     (2 CRISPRs, 1 questionable structure)
Mycoplasma hyorhinis GDL-1
Pasteurella multocida subsp. multocida str. HN06     (2 CRISPRs)
Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12     (1 CRISPR)
Vibrio cholerae IEC224
Mycobacterium intracellulare MOTT-02     (3 questionable structures)
Mycobacterium intracellulare MOTT-64     (1 questionable structure)
Wigglesworthia glossinidia endosymbiont of Glossina morsitans morsitans (Yale colony)
Blastococcus saxobsidens DD2     (1 CRISPR)
Rhodospirillum photometricum DSM 122     (4 CRISPRs)
Leptospirillum ferrooxidans C2-3
Brucella suis 1330
Shigella sonnei 53G     (2 CRISPRs, 2 questionable structures)
Bradyrhizobium sp. S23321     (1 questionable structure)
Vibrio cholerae O395     (2 CRISPRs, 1 questionable structure)
Borrelia afzelii PKo
Bifidobacterium longum subsp. infantis ATCC 15697     (2 questionable structures)
Rickettsia philipii str. 364D
Treponema pallidum subsp. pertenue str. SamoaD
Treponema pallidum subsp. pertenue str. CDC2
Treponema pallidum subsp. pertenue str. Gauthier
Treponema pallidum subsp. pallidum DAL-1
Acinetobacter baumannii MDR-ZJ06
Caldisericum exile AZM16c01     (1 CRISPR)
Actinoplanes missouriensis 431     (3 CRISPRs, 14 questionable structures)
Bacillus thuringiensis serovar chinensis CT-43     (2 CRISPRs, 1 questionable structure)
Salmonella enterica subsp. enterica serovar Typhimurium str. D23580     (3 CRISPRs)
Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S     (3 CRISPRs)
Hydrogenobacter thermophilus TK-6     (2 CRISPRs)
Shigella sonnei
Gluconacetobacter xylinus NBRC 3288     (3 CRISPRs)
Acetobacter pasteurianus IFO 3283-03     (1 CRISPR)
Acetobacter pasteurianus IFO 3283-07     (1 CRISPR)
Acetobacter pasteurianus IFO 3283-22     (1 CRISPR)
Acetobacter pasteurianus IFO 3283-26     (1 CRISPR)
Acetobacter pasteurianus IFO 3283-32     (1 CRISPR)
Acetobacter pasteurianus IFO 3283-01-42C     (1 CRISPR)
Acetobacter pasteurianus IFO 3283-12     (1 CRISPR)
Yersinia pestis D106004     (3 CRISPRs)
Yersinia pestis D182038     (3 CRISPRs, 1 questionable structure)
Sulfobacillus acidophilus DSM 10332     (2 CRISPRs)
Shewanella baltica OS678     (1 CRISPR, 1 questionable structure)
Riemerella anatipestifer DSM 15868     (5 CRISPRs, 3 questionable structures)
Acinetobacter baumannii 1656-2
Clostridium difficile 2007855     (18 CRISPRs, 1 questionable structure)
Clostridium difficile BI1     (34 CRISPRs, 1 questionable structure)
Clostridium difficile CF5     (15 CRISPRs, 1 questionable structure)
Pediococcus claussenii ATCC BAA-344
Brucella melitensis M5-90     (1 questionable structure)
Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)
Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)     (1 questionable structure)
Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)
Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)
Mycobacterium bovis BCG str. Mexico     (2 CRISPRs, 1 questionable structure)
Salmonella enterica subsp. enterica serovar Typhimurium str. T000240     (3 CRISPRs)
Rahnella aquatilis CIP 78.65 = ATCC 33071     (3 CRISPRs)
Frateuria aurantia DSM 6220
Fervidobacterium pennivorans DSM 9078     (5 CRISPRs, 1 questionable structure)
Streptococcus pyogenes MGAS15252     (1 CRISPR)
Haemophilus influenzae 10810     (1 questionable structure)
Bifidobacterium breve ACS-071-V-Sch8b     (3 CRISPRs, 4 questionable structures)
Spirochaeta africana DSM 8902     (1 CRISPR, 2 questionable structures)
Caldilinea aerophila DSM 14535 = NBRC 104270     (4 CRISPRs, 6 questionable structures)
Selenomonas ruminantium subsp. lactilytica TAM6421     (1 CRISPR, 2 questionable structures)
Bacillus thuringiensis serovar finitimus YBT-020     (1 questionable structure)
Legionella pneumophila subsp. pneumophila ATCC 43290
Arcobacter butzleri ED-1
Rubrivivax gelatinosus IL144     (2 CRISPRs, 1 questionable structure)
Saprospira grandis str. Lewin     (3 CRISPRs, 5 questionable structures)
Staphylococcus aureus subsp. aureus MSHR1132     (2 CRISPRs, 2 questionable structures)
Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1     (3 CRISPRs)
Bacillus amyloliquefaciens TA208
Clostridium clariflavum DSM 19732     (3 CRISPRs)
Streptomyces bingchenggensis BCW-1     (3 CRISPRs, 7 questionable structures)
Klebsiella oxytoca KCTC 1686     (2 CRISPRs)
Flavobacterium columnare ATCC 49512     (3 CRISPRs)
Enterobacter cloacae EcWSU1
Blattabacterium sp. (Cryptocercus punctulatus) str. Cpu
Corynebacterium pseudotuberculosis 3/99-5     (1 CRISPR)
Brucella abortus A13334
Brucella canis HSK A52141
Geobacillus thermoleovorans CCB_US3_UF5     (2 CRISPRs, 2 questionable structures)
Mycoplasma haemocanis str. Illinois
Brucella suis VBI22
Bacillus amyloliquefaciens CAU-B946
Propionibacterium acnes TypeIA2 P.acn33     (1 questionable structure)
Propionibacterium acnes TypeIA2 P.acn17     (1 questionable structure)
Propionibacterium acnes TypeIA2 P.acn31     (1 questionable structure)
Streptococcus macedonicus ACA-DC 198     (1 CRISPR)
Vibrio sp. EJY3
Sphaerochaeta pleomorpha str. Grapes     (1 CRISPR)
Tannerella forsythia ATCC 43037     (1 CRISPR, 3 questionable structures)
Bacillus cereus NC7401     (1 questionable structure)
Bacillus cereus F837/76     (1 CRISPR, 3 questionable structures)
Clostridium phage phiSM101
Marinitoga piezophila KA3     (5 CRISPRs)
Mycobacterium tuberculosis KZN 4207     (2 CRISPRs, 2 questionable structures)
Oceanimonas sp. GK1     (2 questionable structures)
Filifactor alocis ATCC 35896     (2 CRISPRs)
Serratia symbiotica str. 'Cinara cedri'
Streptococcus macedonicus
Dechlorosoma suillum PS
Desulfovibrio desulfuricans ND132     (1 CRISPR, 1 questionable structure)
Granulicella mallensis MP5ACTX8
Desulfovibrio africanus str. Walvis Bay
Corynebacterium diphtheriae 31A     (1 CRISPR, 1 questionable structure)
Corynebacterium diphtheriae C7 (beta)     (1 CRISPR, 1 questionable structure)
Corynebacterium diphtheriae PW8     (1 CRISPR)
Corynebacterium diphtheriae CDCE 8392     (1 CRISPR, 1 questionable structure)
Corynebacterium diphtheriae 241     (2 CRISPRs, 1 questionable structure)
Corynebacterium diphtheriae HC01     (2 CRISPRs, 1 questionable structure)
Corynebacterium diphtheriae HC02     (1 CRISPR)
Corynebacterium diphtheriae HC03     (1 CRISPR, 1 questionable structure)
Corynebacterium diphtheriae HC04     (1 CRISPR, 1 questionable structure)
Corynebacterium diphtheriae VA01     (1 CRISPR, 2 questionable structures)
Corynebacterium diphtheriae INCA 402     (1 CRISPR)
Corynebacterium diphtheriae BH8     (1 CRISPR, 1 questionable structure)
Niastella koreensis GR20-10     (1 CRISPR, 2 questionable structures)
Mycobacterium rhodesiae NBB3     (2 questionable structures)
Aggregatibacter actinomycetemcomitans ANH9381     (1 CRISPR)
Clostridium sp. BNL1100     (1 CRISPR, 1 questionable structure)
Salinibacter ruber M8
Desulfosporosinus orientis DSM 765     (2 CRISPRs)
Azospirillum lipoferum 4B     (3 CRISPRs, 2 questionable structures)
Bacteroides fragilis 638R     (1 CRISPR)
Acinetobacter calcoaceticus PHEA-2     (1 questionable structure)
Vibrio furnissii NCTC 11218
Pseudovibrio sp. FO-BEG1
Vibrio cholerae O1 str. 2010EL-1786
Owenweeksia hongkongensis DSM 17368     (1 questionable structure)
Rickettsia slovaca 13-B
Paenibacillus terrae HPL-003     (10 CRISPRs, 1 questionable structure)
Taylorella asinigenitalis MCE3     (1 CRISPR, 1 questionable structure)
Bacillus subtilis subsp. spizizenii TU-B-10
Kitasatospora setae KM-6054     (3 CRISPRs, 4 questionable structures)
Streptomyces flavogriseus ATCC 33331     (4 CRISPRs, 2 questionable structures)
Enterobacter asburiae LF7a     (1 questionable structure)
Streptomyces violaceusniger Tu 4113     (5 CRISPRs, 12 questionable structures)
Mycoplasma putrefaciens KS1     (1 questionable structure)
Rhodothermus marinus SG0.5JP17-172     (11 CRISPRs, 3 questionable structures)
Streptomyces sp. SirexAA-E     (4 questionable structures)
Listeria ivanovii subsp. ivanovii PAM 55     (2 CRISPRs, 1 questionable structure)
Candidatus Arthromitus sp. SFB-rat-Yit     (1 CRISPR)
Pseudoxanthomonas spadix BD-a59     (1 CRISPR, 4 questionable structures)
Streptococcus pseudopneumoniae IS7493
Megasphaera elsdenii DSM 20460     (6 CRISPRs, 5 questionable structures)
Lactobacillus ruminis ATCC 27782     (2 CRISPRs)
Blattabacterium sp. (Mastotermes darwiniensis) str. MADAR
Pelagibacterium halotolerans B2     (1 questionable structure)
Glaciecola nitratireducens FR1064
Anabaena variabilis ATCC 29413     (11 CRISPRs, 4 questionable structures)
Methylomicrobium alcaliphilum     (3 CRISPRs, 1 questionable structure)
Bacillus coagulans 36D1     (4 CRISPRs, 7 questionable structures)
Lactococcus garvieae ATCC 49156     (1 questionable structure)
Sphingobium japonicum UT26S
Geobacillus sp. WCH70     (6 CRISPRs)
Klebsiella pneumoniae NTUH-K2044     (2 CRISPRs, 2 questionable structures)
Mycoplasma crocodyli MP145     (1 questionable structure)
Kosmotoga olearia TBF 19.5.1     (5 CRISPRs, 1 questionable structure)
Variovorax paradoxus S110
Acidaminococcus intestini RyC-MR95     (1 CRISPR)
Aminobacterium colombiense DSM 12261     (1 CRISPR)
Desulfovibrio magneticus RS-1     (2 CRISPRs)
Thermovirga lienii DSM 17291     (2 CRISPRs)
Coraliomargarita akajimensis DSM 45221     (4 questionable structures)
Roseburia hominis A2-183     (1 CRISPR, 7 questionable structures)
Sphingobium sp. SYK-6     (1 CRISPR)
Caldicellulosiruptor lactoaceticus 6A     (12 CRISPRs)
Rhodococcus opacus B4
Erwinia pyrifoliae Ep1/96     (5 CRISPRs, 3 questionable structures)
Shewanella violacea DSS12     (1 CRISPR, 3 questionable structures)
Candidatus Sulcia muelleri DMIN
Rickettsia japonica YH
Aggregatibacter phage S1249
Oscillibacter valericigenes Sjm18-20     (2 questionable structures)
Thermoanaerobacter wiegelii Rt8.B1     (3 CRISPRs)
Lactobacillus sanfranciscensis TMW 1.1304     (1 CRISPR)
Acidithiobacillus ferrivorans SS3
Pseudogulbenkiania sp. NH8B     (1 CRISPR)
Micavibrio aeruginosavorus ARL-13     (2 questionable structures)
Haemophilus parainfluenzae T3T1     (1 CRISPR)
Stenotrophomonas maltophilia JV3     (1 questionable structure)
Muricauda ruestringensis DSM 13258     (1 questionable structure)
Vibrio vulnificus MO6-24/O     (1 questionable structure)
Tetragenococcus halophilus NBRC 12172     (1 questionable structure)
Candidatus Chloracidobacterium thermophilum B     (3 CRISPRs, 1 questionable structure)
Xanthomonas axonopodis pv. citrumelo F1
Microlunatus phosphovorus NM-1     (1 CRISPR, 3 questionable structures)
Paenibacillus mucilaginosus KNP414     (5 questionable structures)
Cupriavidus necator N-1
Mycobacterium canettii CIPT 140010059     (1 CRISPR, 2 questionable structures)
Myxococcus fulvus HW-1     (4 CRISPRs, 6 questionable structures)
Marinithermus hydrothermalis DSM 14884     (5 CRISPRs, 2 questionable structures)
Borrelia bissettii DN127
Treponema azotonutricium ZAS-9     (2 CRISPRs, 1 questionable structure)
Frankia symbiont of Datisca glomerata     (1 CRISPR, 7 questionable structures)
Candidatus Pelagibacter sp. IMCC9063
Helicobacter bizzozeronii CIII-1
Collimonas fungivorans Ter331
Gallibacterium anatis UMN179     (2 CRISPRs)
Streptococcus suis ST3     (1 CRISPR, 1 questionable structure)
Pusillimonas sp. T7-7     (2 questionable structures)
Enterobacter aerogenes KCTC 2190     (1 questionable structure)
Candidatus Arthromitus sp. SFB-mouse-Japan     (3 CRISPRs)
Porphyromonas gingivalis TDC60     (5 CRISPRs, 2 questionable structures)
Rickettsia heilongjiangensis 054     (1 questionable structure)
Lactobacillus kefiranofaciens ZW3     (2 CRISPRs)
Clostridium sp. SY8519     (3 CRISPRs, 2 questionable structures)
Pseudomonas putida S16     (1 questionable structure)
Weissella koreensis KACC 15510     (1 questionable structure)
Streptococcus salivarius CCHSS3     (1 CRISPR, 1 questionable structure)
Sulfobacillus acidophilus TPY     (2 CRISPRs)
Salmonella bongori NCTC 12419     (2 CRISPRs)
Nitrosomonas sp. Is79A3
Buchnera aphidicola (Cinara tujafilina)
Verrucosispora maris AB-18-032     (2 CRISPRs, 2 questionable structures)
Simkania negevensis Z
Ramlibacter tataouinensis TTB310     (3 CRISPRs)
Roseobacter litoralis Och 149
Amycolicicoccus subflavus DQS3-9A1
Lactobacillus reuteri SD2112
Marinomonas posidonica IVIA-Po-181
Tepidanaerobacter sp. Re1     (5 CRISPRs, 2 questionable structures)
Eggerthella sp. YY7918     (4 CRISPRs, 2 questionable structures)
Lactobacillus buchneri NRRL B-30929     (1 CRISPR, 2 questionable structures)
Brucella pinnipedialis B2/94     (1 questionable structure)
Mesorhizobium opportunistum WSM2075     (3 questionable structures)
Treponema primitia ZAS-2     (1 CRISPR, 1 questionable structure)
Treponema paraluiscuniculi Cuniculi A
Selenomonas sputigena ATCC 35185     (4 CRISPRs, 1 questionable structure)
Mycobacterium africanum GM041182     (2 CRISPRs, 1 questionable structure)
Francisella sp. TX077308
Zymomonas mobilis subsp. pomaceae ATCC 29192     (4 CRISPRs)
Cellulomonas fimi ATCC 484     (1 CRISPR, 1 questionable structure)
Cellvibrio gilvus ATCC 13127     (1 questionable structure)
Alicycliphilus denitrificans K601     (1 CRISPR)
Zobellia galactanivorans     (1 questionable structure)
Geobacillus thermoglucosidasius C56-YS93     (6 CRISPRs, 2 questionable structures)
Clostridium lentocellum DSM 5427
Erysipelothrix rhusiopathiae str. Fujisawa
Corynebacterium resistens DSM 45100     (2 CRISPRs, 3 questionable structures)
Thermodesulfatator indicus DSM 15286     (3 CRISPRs, 1 questionable structure)
Thermotoga thermarum DSM 5069     (6 CRISPRs)
Sphingobium chlorophenolicum L-1
Sinorhizobium meliloti AK83
Candidatus Midichloria mitochondrii IricVA
Desulfotomaculum ruminis DSM 2154     (10 CRISPRs, 1 questionable structure)
Mahella australiensis 50-1 BON     (2 CRISPRs, 1 questionable structure)
Coriobacterium glomerans PW2     (2 CRISPRs)
Novosphingobium sp. PP1Y
Glaciecola sp. 4H-3-7+YE-5     (1 CRISPR)
Alteromonas sp. SN2     (1 questionable structure)
Flexistipes sinusarabici DSM 4947     (7 CRISPRs)
Thioalkalimicrobium cyclicum ALM1
Marinomonas mediterranea MMB-1     (5 CRISPRs)
Hyphomicrobium sp. MC1     (1 questionable structure)
Delftia sp. Cs1-4     (2 CRISPRs)
Isoptericola variabilis 225     (3 questionable structures)
Pseudomonas fulva 12-X     (1 CRISPR)
Sphingobacterium sp. 21     (3 CRISPRs, 3 questionable structures)
Spirochaeta caldaria DSM 7334     (2 CRISPRs, 1 questionable structure)
Thermodesulfobium narugense DSM 14796     (3 CRISPRs)
Fluviicola taffensis DSM 16823     (1 CRISPR)
Spirochaeta coccoides DSM 17374     (2 CRISPRs, 1 questionable structure)
Haliscomenobacter hydrossis DSM 1100     (9 CRISPRs, 6 questionable structures)
Desulfotomaculum kuznetsovii DSM 6115     (10 CRISPRs, 1 questionable structure)
Streptococcus parasanguinis ATCC 15912     (1 CRISPR, 2 questionable structures)
Runella slithyformis DSM 19594     (2 CRISPRs, 1 questionable structure)
Parachlamydia acanthamoebae UV7
Prevotella denticola F0289     (2 CRISPRs, 1 questionable structure)
Serratia sp. AS12     (1 CRISPR, 1 questionable structure)
Serratia sp. AS9     (1 CRISPR, 1 questionable structure)
Thermodesulfobacterium sp. OPB45     (2 CRISPRs, 1 questionable structure)
Methylomonas methanica MC09     (4 CRISPRs, 2 questionable structures)
Thermoanaerobacterium xylanolyticum LX-11     (3 CRISPRs, 1 questionable structure)
Corynebacterium variabile DSM 44702
Capnocytophaga canimorsus Cc5     (2 CRISPRs)
Mycoplasma mycoides subsp. capri LC str. 95010     (3 questionable structures)
Desulfotomaculum carboxydivorans CO-1-SRB     (4 CRISPRs)
Treponema succinifaciens DSM 2489     (1 CRISPR)
Mycobacterium sp. JDM601     (5 questionable structures)
Porphyromonas asaccharolytica DSM 20707     (1 CRISPR, 3 questionable structures)
Cyclobacterium marinum DSM 745
Desulfobacca acetoxidans DSM 11109     (7 CRISPRs, 3 questionable structures)
Vibrio anguillarum 775     (1 questionable structure)
Chlamydia trachomatis L2c
Candidatus Tremblaya princeps PCIT
Candidatus Moranella endobia PCIT
Treponema brennaborense DSM 12168     (2 CRISPRs, 8 questionable structures)
Acidiphilium multivorum AIU301
Streptococcus oralis Uo5     (1 CRISPR)
Clostridium botulinum BKT015925     (6 CRISPRs)
Streptococcus parauberis KCTC 11537
Melissococcus plutonius ATCC 35311     (1 questionable structure)
Bacillus coagulans 2-6     (2 CRISPRs, 1 questionable structure)
Corynebacterium ulcerans BR-AD22     (3 CRISPRs)
Mycoplasma bovis Hubei-1
Pseudomonas stutzeri ATCC 17588 = LMG 11199     (1 questionable structure)
Leuconostoc sp. C2
Streptococcus pasteurianus ATCC 43144     (1 CRISPR)
Lacinutrix sp. 5H-3-7-4
Glaciecola sp. 4H-3-7+YE-5     (2 questionable structures)
Krokinobacter sp. 4H-3-7-5
Acidithiobacillus caldus SM-1     (3 CRISPRs, 1 questionable structure)
Clostridium acetobutylicum DSM 1731     (2 questionable structures)
Polymorphum gilvum SL003B-26A1     (1 CRISPR)
Pseudomonas brassicacearum subsp. brassicacearum NFM421     (1 questionable structure)
Aeromonas veronii B565     (5 questionable structures)
Burkholderia gladioli BSR3
Pseudomonas mendocina NK-01
Carnobacterium sp. 17-4
Chlamydophila pecorum E58
Hippea maritima DSM 10411
Aerococcus urinae ACS-120-V-Col10a
Yersinia enterocolitica subsp. palearctica 105.5R(r)
Nitrosomonas sp. AL212     (2 CRISPRs)
Spirochaeta sp. Buddy     (1 CRISPR, 1 questionable structure)
Aliivibrio salmonicida LFI1238
Synechococcus sp. PCC 7002     (3 CRISPRs)
Stigmatella aurantiaca DW4/3-1     (4 questionable structures)
Salinispora arenicola CNS-205     (8 CRISPRs)
Dinoroseobacter shibae DFL 12     (2 CRISPRs, 1 questionable structure)
Salmonella enterica subsp. enterica serovar Newport str. SL254     (2 CRISPRs)
Geobacter sp. M18     (4 questionable structures)
Bifidobacterium longum subsp. infantis 157F     (2 questionable structures)
Bifidobacterium longum subsp. longum JCM 1217     (1 questionable structure)
Desulfobulbus propionicus DSM 2032     (1 CRISPR)
Burkholderia sp. CCGE1001
Acidovorax avenae subsp. avenae ATCC 19860     (6 CRISPRs)
Syntrophobotulus glycolicus DSM 8271     (3 CRISPRs)
Bacteroides salanitronis DSM 18170     (2 questionable structures)
Deinococcus proteolyticus MRP     (4 CRISPRs, 2 questionable structures)
Acidobacterium sp. MP5ACTX9     (3 questionable structures)
Mycoplasma suis KI_3806
Deinococcus maricopensis DSM 21211     (2 questionable structures)
Odoribacter splanchnicus DSM 20712     (1 CRISPR, 5 questionable structures)
Rahnella sp. Y9602     (1 CRISPR)
Thermus scotoductus SA-01     (3 CRISPRs, 1 questionable structure)
Planctomyces brasiliensis DSM 5305     (2 CRISPRs, 1 questionable structure)
Pedobacter saltans DSM 12145     (2 questionable structures)
Mycoplasma suis str. Illinois
Agrobacterium sp. H13-3
Weeksella virosa DSM 16922     (1 CRISPR)
Cellulophaga lytica DSM 7489     (2 questionable structures)
Desulfurobacterium thermolithotrophum DSM 11699     (1 CRISPR)
Lactobacillus acidophilus 30SC     (1 questionable structure)
Arthrobacter phenanthrenivorans Sphe3     (1 questionable structure)
Bacillus subtilis BSn5
Mycoplasma haemofelis str. Langford 1
Microbacterium testaceum StLB037     (7 questionable structures)
Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069     (2 CRISPRs, 1 questionable structure)
Alicycliphilus denitrificans BC     (2 CRISPRs, 1 questionable structure)
Paludibacter propionicigenes WB4     (2 CRISPRs, 2 questionable structures)
Ruminococcus albus 7     (4 CRISPRs, 4 questionable structures)
Pseudoxanthomonas suwonensis 11-1     (1 questionable structure)
Pseudoalteromonas sp. SM9913     (1 questionable structure)
Mycobacterium sp. Spyr1
Mycoplasma bovis PG45
Terriglobus saanensis SP1PR4
Neisseria lactamica 020-06     (6 CRISPRs, 2 questionable structures)
Thermoanaerobacter brockii subsp. finnii Ako-1     (5 CRISPRs)
Geobacillus sp. Y412MC52     (6 CRISPRs, 2 questionable structures)
Asticcacaulis excentricus CB 48
Isosphaera pallida ATCC 43644     (2 CRISPRs, 4 questionable structures)
Pantoea sp. At-9b     (2 questionable structures)
Variovorax paradoxus EPS     (1 questionable structure)
Desulfovibrio aespoeensis Aspo-2
Marivirga tractuosa DSM 4126
Thermaerobacter marianensis DSM 12885     (2 CRISPRs)
Thermovibrio ammonificans HB-1     (8 CRISPRs, 1 questionable structure)
Micromonospora sp. L5
Bacillus cellulosilyticus DSM 2522     (5 questionable structures)
Rhodopseudomonas palustris DX-1     (1 CRISPR, 1 questionable structure)
Desulfurispirillum indicum S5     (2 CRISPRs)
Candidatus Liberibacter solanacearum CLso-ZC1     (1 questionable structure)
Ethanoligenens harbinense YUAN-3     (1 CRISPR)
Oceanithermus profundus DSM 14977     (1 CRISPR)
Cellulophaga algicola DSM 14237     (1 questionable structure)
Bacteroides helcogenes P 36-108     (1 CRISPR)
Lactobacillus amylovorus GRL 1112
Bartonella clarridgeiae 73     (1 questionable structure)
Sulfuricurvum kujiense DSM 16994
Intrasporangium calvum DSM 43043     (3 questionable structures)
Nitratifractor salsuginis DSM 16511     (2 CRISPRs, 1 questionable structure)
Campylobacter jejuni subsp. jejuni ICDCCJ07001     (1 CRISPR, 2 questionable structures)
Mesorhizobium ciceri biovar biserrulae WSM1271     (4 questionable structures)
Lactobacillus delbrueckii subsp. bulgaricus ND02     (1 CRISPR, 1 questionable structure)
Calditerrivibrio nitroreducens DSM 19672     (4 CRISPRs)
Candidatus Blochmannia vafer str. BVAF
Haemophilus influenzae F3031     (1 questionable structure)
Mycoplasma leachii PG50     (6 questionable structures)
Methylovorus sp. MP688
Anaerolinea thermophila UNI-1     (5 CRISPRs, 2 questionable structures)
Haemophilus influenzae F3047
Helicobacter felis ATCC 49179     (1 questionable structure)
Staphylococcus pseudintermedius HKU10-03
Taylorella equigenitalis MCE9
Mycoplasma fermentans M64     (1 questionable structure)
Herpetosiphon aurantiacus ATCC 23779     (13 CRISPRs, 8 questionable structures)
Lactobacillus acidophilus NCFM     (1 CRISPR)
Veillonella parvula DSM 2008     (10 CRISPRs)
Leadbetterella byssophila DSM 17132     (2 CRISPRs, 3 questionable structures)
Sorangium cellulosum 'So ce 56'     (5 CRISPRs, 9 questionable structures)
Frankia sp. EuI1c     (7 questionable structures)
Ferrimonas balearica DSM 9799     (1 questionable structure)
Paenibacillus polymyxa E681     (1 CRISPR)
Cyanothece sp. PCC 7822     (8 CRISPRs, 4 questionable structures)
Clostridium sticklandii DSM 519     (1 questionable structure)
Gardnerella vaginalis ATCC 14019     (1 CRISPR, 1 questionable structure)
Sulfurimonas autotrophica DSM 16294
Ilyobacter polytropus DSM 2926     (1 CRISPR, 1 questionable structure)
Thermoanaerobacter sp. X513     (4 CRISPRs)
Geobacillus sp. Y4.1MC1     (5 CRISPRs, 4 questionable structures)
Caldicellulosiruptor hydrothermalis 108     (6 CRISPRs)
Caldicellulosiruptor kristjanssonii 177R1B     (14 CRISPRs)
Caldicellulosiruptor kronotskyensis 2002     (8 CRISPRs)
Caldicellulosiruptor owensensis OL     (3 CRISPRs)
Mycoplasma fermentans JER     (1 questionable structure)
Burkholderia sp. CCGE1003     (2 questionable structures)
Rhodomicrobium vannielii ATCC 17100     (4 CRISPRs)
Halanaerobium sp. 'sapolanicus'     (1 CRISPR, 2 questionable structures)
Spirochaeta thermophila DSM 6192     (1 CRISPR, 2 questionable structures)
Rhodococcus equi 103S     (2 questionable structures)
Bacillus amyloliquefaciens DSM7
Enterobacter cloacae SCF1     (2 questionable structures)
Bifidobacterium bifidum PRL2010     (2 questionable structures)
Pantoea vagans C9-1     (1 questionable structure)
Bacillus atrophaeus 1942
Achromobacter xylosoxidans A8     (1 questionable structure)
Rothia dentocariosa ATCC 17931     (2 CRISPRs, 1 questionable structure)
Helicobacter pylori SJM180     (2 questionable structures)
Helicobacter pylori PeCan4     (1 CRISPR, 2 questionable structures)
Halomonas elongata DSM 2581     (1 CRISPR, 2 questionable structures)
Arthrobacter arilaitensis Re117
Ketogulonicigenium vulgare Y25     (1 CRISPR)
Burkholderia rhizoxinica HKI 454
Bifidobacterium bifidum S17     (1 CRISPR, 2 questionable structures)
Paenibacillus polymyxa SC2     (1 questionable structure)
Lactobacillus plantarum subsp. plantarum ST-III
Bifidobacterium longum subsp. longum BBMN68     (4 CRISPRs, 1 questionable structure)
Eubacterium limosum KIST612     (2 CRISPRs)
Chloroflexus aggregans DSM 9485     (3 CRISPRs, 21 questionable structures)
Flavobacteriales bacterium HTCC2170
Streptococcus pneumoniae 670-6B     (1 questionable structure)
Dickeya dadantii 3937     (4 CRISPRs)
Parvularcula bermudensis HTCC2503     (1 CRISPR)
Streptococcus pneumoniae AP200
Bacillus subtilis subsp. spizizenii str. W23
Candidatus Sulcia muelleri CARI
Candidatus Zinderia insecticola CARI
Erwinia billingiae Eb661     (3 questionable structures)
Helicobacter pylori
Xenorhabdus nematophila ATCC 19061     (4 CRISPRs, 1 questionable structure)
Acinetobacter sp. DR1
cyanobacterium UCYN-A
Mycoplasma hyorhinis HUB-1
Nitrosococcus watsoni C-113     (1 CRISPR, 2 questionable structures)
Butyrivibrio proteoclasticus B316
Hyphomicrobium denitrificans ATCC 51888     (3 questionable structures)
Desulfarculus baarsii DSM 2075     (3 CRISPRs, 3 questionable structures)
Micromonospora aurantiaca ATCC 27029     (5 questionable structures)
Helicobacter pylori B8
Brachyspira pilosicoli 95/1000
Leuconostoc gasicomitatum LMG 18811
gamma proteobacterium HdN1     (2 CRISPRs, 2 questionable structures)
Candidatus Nitrospira defluvii     (1 CRISPR)
Gallionella capsiferriformans ES-2     (1 questionable structure)
Candidatus Puniceispirillum marinum IMCC1322     (2 CRISPRs)
Lactobacillus casei str. Zhang     (1 CRISPR, 1 questionable structure)
Streptococcus pneumoniae TCH8431/19A     (2 questionable structures)
'Nostoc azollae' 0708     (1 CRISPR, 3 questionable structures)
Dehalogenimonas lykanthroporepellens BL-DC-9     (2 questionable structures)
Prevotella melaninogenica ATCC 25845     (3 questionable structures)
Thermosediminibacter oceani DSM 16646     (6 CRISPRs)
Clostridium cellulovorans 743B     (1 CRISPR, 1 questionable structure)
Spirochaeta smaragdinae DSM 11293     (1 CRISPR)
Acetohalobium arabaticum DSM 5501     (1 CRISPR)
Thermoanaerobacterium thermosaccharolyticum DSM 571     (5 CRISPRs)
Caldicellulosiruptor obsidiansis OB47     (10 CRISPRs)
Clostridium saccharolyticum WM1     (1 CRISPR, 7 questionable structures)
Olsenella uli DSM 7084     (1 CRISPR, 5 questionable structures)
Brevundimonas subvibrioides ATCC 15264
Bacillus cereus biovar anthracis str. CI     (1 questionable structure)
Amycolatopsis mediterranei U32     (4 CRISPRs, 8 questionable structures)
Herbaspirillum seropedicae SmR1     (2 questionable structures)
Corynebacterium pseudotuberculosis FRC41     (1 CRISPR)
Clostridium ljungdahlii
Cellulomonas flavigena DSM 20109     (2 questionable structures)
Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111     (9 CRISPRs, 3 questionable structures)
Sanguibacter keddieii DSM 10542     (2 questionable structures)
Tsukamurella paurometabola DSM 20162
Brachyspira murdochii DSM 12563     (1 CRISPR, 2 questionable structures)
Bacillus megaterium QM B1551     (2 questionable structures)
Segniliparus rotundus DSM 44985     (3 questionable structures)
Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1     (1 CRISPR)
Salinibacter ruber
Croceibacter atlanticus HTCC2559     (1 questionable structure)
Prevotella ruminicola 23     (1 CRISPR, 1 questionable structure)
Rhodobacter capsulatus SB 1003     (6 CRISPRs)
Legionella pneumophila 2300/99 Alcoy     (1 CRISPR, 1 questionable structure)
Thermobispora bispora DSM 43833     (6 CRISPRs, 5 questionable structures)
Caulobacter segnis ATCC 21756     (1 questionable structure)
Planctomyces limnophilus DSM 3776     (1 CRISPR, 1 questionable structure)
Meiothermus silvanus DSM 9946     (8 CRISPRs, 2 questionable structures)
Mobiluncus curtisii ATCC 43063     (1 CRISPR)
Bacillus tusciae DSM 2912     (4 CRISPRs, 1 questionable structure)
Arcobacter nitrofigilis DSM 7299     (1 CRISPR)
Thermoanaerobacter mathranii subsp. mathranii str. A3     (3 CRISPRs)
Desulfurivibrio alkaliphilus AHT2     (2 CRISPRs)
Bacillus megaterium DSM319     (2 questionable structures)
Thermincola sp. JR     (7 CRISPRs)
Yersinia pestis Z176003     (3 CRISPRs)
Starkeya novella DSM 506     (1 questionable structure)
Burkholderia sp. CCGE1002
Syntrophothermus lipocalidus DSM 12680     (2 CRISPRs, 1 questionable structure)
Arcanobacterium haemolyticum DSM 20595     (1 CRISPR, 1 questionable structure)
Truepera radiovictrix DSM 17093     (9 CRISPRs)
Zunongwangia profunda SM-A87     (2 CRISPRs, 1 questionable structure)
Geobacillus sp. C56-T3     (4 CRISPRs, 3 questionable structures)
Bacillus thuringiensis BMB171     (1 questionable structure)
Enterobacter cloacae subsp. cloacae ATCC 13047     (2 questionable structures)
Waddlia chondrophila WSU 86-1044     (1 questionable structure)
Lactobacillus crispatus ST1     (3 CRISPRs)
Moraxella catarrhalis RH4     (2 CRISPRs, 1 questionable structure)
Thiomonas intermedia K12     (3 questionable structures)
Bifidobacterium longum subsp. longum JDM301     (2 questionable structures)
Comamonas sp. CNB-1
Bacillus selenitireducens MLS10
Candidatus Riesia pediculicola USDA
Propionibacterium acnes SK137
Erwinia amylovora CFBP1430
Methylotenera sp. 301
Leuconostoc kimchii IMSNU11154
Azospirillum sp. B510     (7 CRISPRs, 1 questionable structure)
Mycoplasma agalactiae
Streptococcus mitis B6     (1 questionable structure)
Thioalkalivibrio sp. K90mix     (2 CRISPRs)
Bacillus pseudofirmus OF4     (2 questionable structures)
Stackebrandtia nassauensis DSM 44728     (3 CRISPRs, 4 questionable structures)
Nitrosococcus halophilus Nc4     (6 CRISPRs, 1 questionable structure)
Geodermatophilus obscurus DSM 43160     (2 questionable structures)
Allochromatium vinosum DSM 180     (3 CRISPRs, 2 questionable structures)
Thermoanaerobacter italicus Ab9     (4 CRISPRs)
Thermocrinis albus DSM 14484     (5 CRISPRs)
Deferribacter desulfuricans SSM1     (4 CRISPRs)
Klebsiella variicola At-22     (2 CRISPRs, 1 questionable structure)
Legionella longbeachae NSW150
Helicobacter mustelae 12198     (1 CRISPR, 3 questionable structures)
Streptomyces scabiei 87.22     (2 questionable structures)
Listeria seeligeri serovar 1/2b str. SLCC3954     (4 CRISPRs, 1 questionable structure)
Staphylococcus lugdunensis HKU09-01     (1 CRISPR, 4 questionable structures)
Clostridiales genomosp. BVAB3 str. UPII9-5     (1 questionable structure)
Escherichia coli O55:H7 str. CB9615     (2 CRISPRs)
Pantoea ananatis LMG 20103
Xenorhabdus bovienii SS-2004     (3 CRISPRs, 3 questionable structures)
Streptococcus mutans NN2025     (2 CRISPRs)
Denitrovibrio acetiphilus DSM 12809     (1 questionable structure)
Erwinia amylovora     (3 CRISPRs, 1 questionable structure)
Sideroxydans lithotrophicus ES-1     (1 questionable structure)
Dehalococcoides sp. GT     (1 CRISPR)
Listeria monocytogenes 08-5923     (1 CRISPR, 2 questionable structures)
Streptococcus gallolyticus UCN34     (2 CRISPRs)
Listeria monocytogenes 08-5578     (1 CRISPR, 2 questionable structures)
Erwinia amylovora ATCC 49946     (3 CRISPRs, 1 questionable structure)
Bifidobacterium dentium Bd1     (2 CRISPRs, 7 questionable structures)
Conexibacter woesei DSM 14684     (3 questionable structures)
Kribbella flavida DSM 17836     (8 questionable structures)
Pirellula staleyi DSM 6068     (2 CRISPRs, 3 questionable structures)
Spirosoma linguale DSM 74     (1 CRISPR, 2 questionable structures)
Gardnerella vaginalis 409-05     (1 CRISPR, 3 questionable structures)
Thermotoga naphthophila RKU-10     (8 CRISPRs)
Acidaminococcus fermentans DSM 20731     (1 CRISPR, 3 questionable structures)
Citrobacter rodentium ICC168     (2 CRISPRs, 16 questionable structures)
Rothia mucilaginosa DY-18     (2 CRISPRs, 7 questionable structures)
Lactococcus lactis subsp. lactis KF147     (2 questionable structures)
Streptosporangium roseum DSM 43021
Dickeya dadantii Ech586
Haliangium ochraceum DSM 14365     (3 CRISPRs, 14 questionable structures)
Streptobacillus moniliformis DSM 12112     (1 CRISPR)
Gordonia bronchialis DSM 43247     (3 questionable structures)
Clostridium difficile CD196     (13 CRISPRs, 5 questionable structures)
Clostridium difficile R20291     (13 CRISPRs, 5 questionable structures)
Vibrio sp. Ex25     (1 questionable structure)
Mycoplasma hominis     (2 questionable structures)
Dehalococcoides sp. VS
Blattabacterium sp. (Blattella germanica) str. Bge
Cronobacter turicensis     (2 CRISPRs, 6 questionable structures)
Ammonifex degensii KC4     (8 CRISPRs, 2 questionable structures)
Xylanimonas cellulosilytica DSM 15894     (8 CRISPRs, 8 questionable structures)
Thermomonospora curvata DSM 43183     (15 CRISPRs, 5 questionable structures)
Sphaerobacter thermophilus DSM 20745     (1 CRISPR, 5 questionable structures)
Geobacillus sp. Y412MC10     (1 questionable structure)
Edwardsiella tarda EIB202     (1 questionable structure)
Rhodothermus marinus DSM 4252     (10 CRISPRs, 3 questionable structures)
Sulfurospirillum deleyianum DSM 6946     (1 CRISPR, 2 questionable structures)
Thermanaerovibrio acidaminovorans DSM 6589
Thermobaculum terrenum ATCC BAA-798     (5 CRISPRs, 3 questionable structures)
Sebaldella termitidis ATCC 33386     (4 CRISPRs, 2 questionable structures)
Geobacillus sp. Y412MC61     (6 CRISPRs, 3 questionable structures)
Halothiobacillus neapolitanus c2     (1 CRISPR)
Pectobacterium wasabiae WPP163     (4 CRISPRs, 2 questionable structures)
Escherichia coli O26:H11 str. 11368     (2 CRISPRs, 1 questionable structure)
Anaplasma centrale str. Israel     (1 questionable structure)
Escherichia coli O103:H2 str. 12009     (2 CRISPRs, 2 questionable structures)
Escherichia coli O111:H- str. 11128     (2 CRISPRs, 1 questionable structure)
Blattabacterium sp. (Periplaneta americana) str. BPLAN
Zymomonas mobilis subsp. mobilis NCIMB 11163     (4 CRISPRs)
Lactobacillus johnsonii FI9785     (1 questionable structure)
Aggregatibacter actinomycetemcomitans D11S-1
Staphylococcus aureus subsp. aureus ED98     (2 CRISPRs, 7 questionable structures)
Comamonas testosteroni CNB-2     (2 questionable structures)
Enterobacter sakazakii ATCC BAA-894     (3 CRISPRs, 6 questionable structures)
Paenibacillus sp. JDR-2     (3 questionable structures)
Mycobacterium ulcerans     (1 questionable structure)
Bifidobacterium animalis subsp. lactis AD011     (1 CRISPR, 3 questionable structures)
Geobacter sp. M21     (4 questionable structures)
Actinosynnema mirum DSM 43827     (3 questionable structures)
Nakamurella multipartita DSM 44233     (7 CRISPRs, 1 questionable structure)
Flavobacteriaceae bacterium 3519-10     (1 questionable structure)
Streptococcus suis BM407     (1 questionable structure)
Bifidobacterium animalis subsp. lactis Bl-04     (1 CRISPR, 1 questionable structure)
Helicobacter pylori B38     (1 questionable structure)
Methylobacterium extorquens AM1     (2 questionable structures)
Brachybacterium faecium DSM 4810     (1 questionable structure)
Dyadobacter fermentans DSM 18053     (4 questionable structures)
Capnocytophaga ochracea DSM 7271     (1 CRISPR, 5 questionable structures)
Desulfomicrobium baculatum DSM 4028     (2 questionable structures)
Streptococcus suis P1/7     (1 questionable structure)
Borrelia garinii PBi
Photorhabdus asymbiotica     (6 CRISPRs, 3 questionable structures)
Robiginitalea biformata HTCC2501     (2 questionable structures)
Teredinibacter turnerae T7901     (2 CRISPRs, 1 questionable structure)
Rhizobium leguminosarum bv. trifolii WSM1325     (1 questionable structure)
Cyanothece sp. PCC 8802     (8 CRISPRs, 4 questionable structures)
Escherichia coli B str. REL606     (2 CRISPRs, 3 questionable structures)
Ralstonia pickettii 12D
Neorickettsia risticii str. Illinois
Mycoplasma conjunctivae
Micrococcus luteus NCTC 2665
Cryptobacterium curtum DSM 15641     (1 questionable structure)
Slackia heliotrinireducens DSM 20476     (2 questionable structures)
Jonesia denitrificans DSM 20603     (2 questionable structures)
Saccharomonospora viridis DSM 43017     (10 CRISPRs)
Mycobacterium tuberculosis KZN 1435     (2 CRISPRs, 2 questionable structures)
Kytococcus sedentarius DSM 20547     (1 questionable structure)
Catenulispora acidiphila DSM 44928     (6 CRISPRs, 4 questionable structures)
Eggerthella lenta DSM 2243     (2 CRISPRs)
Desulfohalobium retbaense DSM 5692     (1 CRISPR)
Desulfotomaculum acetoxidans DSM 771     (11 CRISPRs, 1 questionable structure)
Pedobacter heparinus DSM 2366     (1 questionable structure)
Chitinophaga pinensis DSM 2588     (2 questionable structures)
Streptococcus dysgalactiae subsp. equisimilis GGS_124     (1 CRISPR)
Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446     (4 CRISPRs)
Candidatus Accumulibacter phosphatis clade IIA str. UW-1     (2 CRISPRs)
Kangiella koreensis DSM 16069
Leptotrichia buccalis DSM 1135     (4 CRISPRs, 1 questionable structure)
Acidimicrobium ferrooxidans DSM 10331     (2 CRISPRs)
Anaerococcus prevotii DSM 20548
Desulfovibrio salexigens DSM 2638
Candidatus Liberibacter asiaticus str. psy62
Escherichia coli O157:H7 str. TW14359     (2 CRISPRs)
Bifidobacterium animalis subsp. lactis DSM 10140     (1 CRISPR, 2 questionable structures)
Dickeya zeae Ech1591     (4 CRISPRs, 2 questionable structures)
Pectobacterium carotovorum subsp. carotovorum PC1     (2 CRISPRs)
Lactobacillus rhamnosus Lc 705     (1 questionable structure)
Streptococcus suis SC84     (1 questionable structure)
Brucella microti CCM 4915     (1 questionable structure)
Dickeya dadantii Ech703     (4 CRISPRs)
Hirschia baltica ATCC 49814     (1 questionable structure)
Candidatus Sulcia muelleri SMDSEM
Aggregatibacter aphrophilus NJ8700     (1 CRISPR)
Acetobacter pasteurianus IFO 3283-01     (1 CRISPR)
Bartonella grahamii as4aup     (1 questionable structure)
Lactobacillus plantarum JDM1
Methylobacterium extorquens DM4     (2 questionable structures)
Neisseria meningitidis alpha14     (6 CRISPRs, 3 questionable structures)
Thauera sp. MZ1T     (1 CRISPR, 4 questionable structures)
Rickettsia africae ESF-5
Atopobium parvulum DSM 20469
Candidatus Hodgkinia cicadicola Dsem
Chlamydia trachomatis B/Jali20/OT
Methylovorus sp. SIP3-4
Methylotenera mobilis JLW8
Chlamydia trachomatis B/TZ1A828/OT
Desulfobacterium autotrophicum HRM2     (1 CRISPR, 1 questionable structure)
Pseudomonas fluorescens SBW25
Rhodococcus erythropolis PR4     (3 questionable structures)
Acidobacterium capsulatum ATCC 51196     (1 CRISPR)
Azotobacter vinelandii DJ     (2 CRISPRs, 1 questionable structure)
Brevibacillus brevis NBRC 100599
Rhizobium sp. NGR234
Staphylococcus carnosus subsp. carnosus TM300
Streptococcus equi subsp. zooepidemicus     (1 CRISPR, 2 questionable structures)
Beutenbergia cavernae DSM 12333
Streptococcus pneumoniae 70585     (1 questionable structure)
Streptococcus pneumoniae JJA     (1 questionable structure)
Streptococcus pneumoniae P1031     (1 questionable structure)
Eubacterium rectale ATCC 33656     (2 CRISPRs)
Eubacterium eligens ATCC 27750     (1 CRISPR, 1 questionable structure)
Clostridium botulinum A2 str. Kyoto     (6 CRISPRs)
Deinococcus deserti VCD115
Mycobacterium bovis BCG str. Tokyo 172     (2 CRISPRs, 1 questionable structure)
Brachyspira hyodysenteriae WA1     (2 questionable structures)
Bacillus anthracis str. CDC 684     (1 questionable structure)
Bacillus cereus 03BB102     (1 questionable structure)
Bacillus anthracis str. A0248     (1 CRISPR, 2 questionable structures)
Vibrio cholerae MJ-1236
Escherichia coli BW2952     (2 CRISPRs, 2 questionable structures)
Wolbachia sp. wRi     (2 questionable structures)
Persephonella marina EX-H1     (5 CRISPRs)
Sulfurihydrogenibium azorense Az-Fu1     (13 CRISPRs)
Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594     (2 CRISPRs)
Streptococcus pneumoniae Taiwan19F-14     (2 questionable structures)
Xanthomonas campestris pv. campestris str. B100     (1 questionable structure)
Clostridium botulinum Ba4 str. 657     (7 CRISPRs)
Brucella melitensis ATCC 23457     (1 questionable structure)
Corynebacterium aurimucosum ATCC 700975     (1 CRISPR)
Streptococcus equi subsp. equi 4047     (3 questionable structures)
Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)     (1 questionable structure)
Tolumonas auensis DSM 9187     (1 CRISPR, 1 questionable structure)
Burkholderia glumae BGR1     (1 questionable structure)
Corynebacterium aurimucosum
Exiguobacterium sp. AT1b
Burkholderia pseudomallei MSHR346
Laribacter hongkongensis HLHK9
Rickettsia peacockii str. Rustic
Vibrio cholerae M66-2
Listeria monocytogenes Clip81459
Edwardsiella ictaluri 93-146
Corynebacterium kroppenstedtii DSM 44385
Acidithiobacillus ferrooxidans ATCC 23270     (4 CRISPRs, 2 questionable structures)
Gemmatimonas aurantiaca T-27
Nautilia profundicola AmH
Methylocella silvestris BL2     (1 questionable structure)
Cyanothece sp. PCC 7424     (14 CRISPRs, 9 questionable structures)
Gluconacetobacter diazotrophicus PAl 5     (7 CRISPRs)
Bacillus cereus Q1
Cyanothece sp. PCC 7425     (5 CRISPRs)
Bacillus cereus G9842     (2 questionable structures)
Bacillus cereus AH187
Bacillus cereus AH820     (1 questionable structure)
Shewanella baltica OS223
Methylobacterium chloromethanicum CM4
Anaeromyxobacter dehalogenans 2CP-1     (2 CRISPRs, 3 questionable structures)
Haemophilus parasuis SH0165     (2 questionable structures)
Desulfovibrio vulgaris str. 'Miyazaki F'     (1 CRISPR, 1 questionable structure)
Burkholderia cenocepacia J2315
Streptococcus uberis 0140J
Shewanella piezotolerans WP3     (1 CRISPR)
Buchnera aphidicola (Cinara cedri)
Desulfitobacterium hafniense DCB-2     (5 CRISPRs, 1 questionable structure)
Thermodesulfovibrio yellowstonii DSM 11347     (5 CRISPRs)
Campylobacter lari RM2100
Coprothermobacter proteolyticus DSM 5265     (1 CRISPR, 2 questionable structures)
Dictyoglomus thermophilum H-6-12     (3 CRISPRs)
Thermomicrobium roseum DSM 5159     (1 CRISPR, 2 questionable structures)
Thermotoga neapolitana DSM 4359     (8 CRISPRs)
Agrobacterium vitis S4     (1 questionable structure)
Agrobacterium radiobacter K84
Geobacter sp. FRC-32     (1 CRISPR)
Anaplasma marginale str. Florida
Halothermothrix orenii H 168     (1 CRISPR)
Clostridium cellulolyticum H10     (3 CRISPRs)
Rhizobium leguminosarum bv. trifolii WSM2304     (1 questionable structure)
Thioalkalivibrio sp. HL-EbGR7     (3 CRISPRs, 5 questionable structures)
Bacillus cereus B4264     (1 questionable structure)
Escherichia coli SE11     (2 CRISPRs, 1 questionable structure)
Borrelia recurrentis A1
Borrelia duttonii Ly
Cyanothece sp. PCC 8801     (6 CRISPRs, 5 questionable structures)
Rhodospirillum centenum SW     (7 CRISPRs, 1 questionable structure)
Coxiella burnetii CbuG_Q212
Coxiella burnetii CbuK_Q154     (1 questionable structure)
Desulfatibacillum alkenivorans AK-01     (1 CRISPR)
Escherichia coli O157:H7 str. EC4115     (2 CRISPRs)
Borrelia burgdorferi ZS7
Arthrobacter chlorophenolicus A6     (1 CRISPR, 1 questionable structure)
Macrococcus caseolyticus JCSC5402     (2 questionable structures)
Methylobacterium nodulans ORS 2060     (4 CRISPRs, 4 questionable structures)
Erwinia tasmaniensis Et1/99     (2 CRISPRs)
Streptococcus pyogenes NZ131     (2 CRISPRs)
Acinetobacter baumannii AB0057     (1 CRISPR, 2 questionable structures)
Chloroflexus sp. Y-400-fl     (4 CRISPRs, 5 questionable structures)
Thermosipho africanus TCF52B     (12 CRISPRs)
Anoxybacillus flavithermus WK1     (3 CRISPRs)
Klebsiella pneumoniae 342     (1 CRISPR, 1 questionable structure)
Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2
Dictyoglomus turgidum DSM 6724     (2 CRISPRs, 1 questionable structure)
Anaerocellum thermophilum DSM 6725     (9 CRISPRs)
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774     (2 CRISPRs)
Diaphorobacter sp. TPSY     (1 CRISPR)
Salmonella enterica subsp. enterica serovar Enteritidis str. P125109     (2 CRISPRs)
Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91     (2 CRISPRs)
Listeria monocytogenes HCC23     (2 CRISPRs)
Lactobacillus reuteri JCM 1112
Acinetobacter baumannii AB307-0294     (1 CRISPR, 3 questionable structures)
Pseudomonas aeruginosa LESB58     (1 CRISPR)
Rhodobacter sphaeroides KD131     (1 CRISPR, 2 questionable structures)
Streptococcus pneumoniae ATCC 700669     (1 questionable structure)
Mycobacterium leprae Br4923
Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)
Helicobacter pylori G27     (2 questionable structures)
Buchnera aphidicola str. 5A (Acyrthosiphon pisum)
Caulobacter crescentus NA1000
Ureaplasma urealyticum serovar 10 str. ATCC 33699
Wolbachia endosymbiont of Culex quinquefasciatus Pel
Helicobacter pylori P12
Escherichia coli O127:H6 str. E2348/69     (2 questionable structures)
Vibrio splendidus LGP32
Clostridium kluyveri NBRC 12016     (5 CRISPRs)
Escherichia coli IAI1     (3 CRISPRs, 1 questionable structure)
Escherichia coli S88     (2 CRISPRs, 2 questionable structures)
Escherichia fergusonii ATCC 35469     (3 CRISPRs, 1 questionable structure)
Escherichia coli 55989     (2 CRISPRs)
Escherichia coli UMN026     (3 CRISPRs, 5 questionable structures)
Escherichia coli IAI39     (1 CRISPR)
Escherichia coli ED1a     (2 CRISPRs, 3 questionable structures)
Escherichia coli LF82     (2 CRISPRs, 2 questionable structures)
Clostridium perfringens SM101     (2 CRISPRs)
Renibacterium salmoninarum ATCC 33209
Borrelia hermsii DAH
Borrelia turicatae 91E135
Clavibacter michiganensis subsp. sepedonicus
Leuconostoc citreum KM20
Mycobacterium abscessus
Candidatus Phytoplasma mali
Rhodopseudomonas palustris TIE-1
Ralstonia pickettii 12J
Acinetobacter baumannii ACICU
Burkholderia cenocepacia MC0-3
Coxiella burnetii Dugway 5J108-111
Methylobacterium populi BJ001
Clostridium botulinum A str. Hall     (8 CRISPRs, 2 questionable structures)
Francisella tularensis subsp. mediasiatica FSC147
Polynucleobacter necessarius STIR1
Rickettsia rickettsii str. Iowa
Natranaerobius thermophilus JW/NM-WN-LF
Chlamydia trachomatis 434/Bu
Chlamydia trachomatis L2b/UCH-1/proctitis
Oligotropha carboxidovorans OM5
Ureaplasma parvum serovar 3 str. ATCC 27815
Escherichia coli str. K-12 substr. MG1655     (2 CRISPRs, 2 questionable structures)
Lactobacillus reuteri DSM 20016
Proteus mirabilis
Prochlorococcus marinus str. MIT 9211
Bifidobacterium longum DJO10A     (1 CRISPR, 1 questionable structure)
Phenylobacterium zucineum HLK1
Helicobacter pylori Shi470
Chloroherpeton thalassium ATCC 35110     (2 CRISPRs, 3 questionable structures)
Stenotrophomonas maltophilia K279a     (4 questionable structures)
Nostoc punctiforme PCC 73102     (6 CRISPRs, 13 questionable structures)
Thermotoga sp. RQ2     (8 CRISPRs)
Mycoplasma arthritidis 158L3-1     (1 CRISPR)
Chlorobium limicola DSM 245     (4 CRISPRs, 3 questionable structures)
Prosthecochloris aestuarii DSM 271     (5 CRISPRs, 1 questionable structure)
Alteromonas macleodii 'Deep ecotype'     (1 CRISPR, 2 questionable structures)
Pelodictyon phaeoclathratiforme BU-1     (3 CRISPRs, 2 questionable structures)
Chlorobium phaeobacteroides BS1     (4 CRISPRs, 2 questionable structures)
Orientia tsutsugamushi str. Ikeda     (2 questionable structures)
Akkermansia muciniphila ATCC BAA-835     (2 CRISPRs)
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'     (1 questionable structure)
Xanthomonas oryzae pv. oryzae PXO99A     (1 CRISPR)
Kocuria rhizophila DC2201
Acidithiobacillus ferrooxidans ATCC 53993     (2 questionable structures)
Hydrogenobaculum sp. Y04AAS1     (1 CRISPR, 1 questionable structure)
Vibrio fischeri MJ11     (1 questionable structure)
Stenotrophomonas maltophilia R551-3     (6 questionable structures)
Burkholderia phymatum STM815
Burkholderia multivorans ATCC 17616
Burkholderia phytofirmans PsJN     (1 questionable structure)
Geobacter lovleyi SZ     (1 CRISPR)
Geobacter bemidjiensis Bem     (6 questionable structures)
Porphyromonas gingivalis ATCC 33277     (4 CRISPRs, 7 questionable structures)
Sulfurihydrogenibium sp. YO3AOP1     (3 CRISPRs, 3 questionable structures)
Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633     (2 CRISPRs)
Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853     (2 CRISPRs)
Elusimicrobium minutum Pei191     (1 CRISPR)
Anaeromyxobacter sp. K     (2 CRISPRs, 4 questionable structures)
Candidatus Amoebophilus asiaticus 5a2     (4 questionable structures)
Salmonella enterica subsp. enterica serovar Agona str. SL483     (2 CRISPRs)
Salmonella enterica subsp. enterica serovar Heidelberg str. SL476     (3 CRISPRs)
Methylacidiphilum infernorum V4     (5 CRISPRs)
Rhizobium etli CIAT 652
Cellvibrio japonicus Ueda107     (1 CRISPR, 1 questionable structure)
Yersinia pseudotuberculosis PB1/+     (3 CRISPRs, 3 questionable structures)
Clostridium botulinum E3 str. Alaska E43     (3 CRISPRs, 1 questionable structure)
Streptococcus pneumoniae G54
Chlorobaculum parvum NCIB 8327     (1 CRISPR, 2 questionable structures)
Neisseria gonorrhoeae NCCP11945     (8 CRISPRs, 1 questionable structure)
Proteus mirabilis HI4320
Actinobacillus pleuropneumoniae serovar 7 str. AP76     (1 CRISPR)
Lactobacillus casei BL23     (1 CRISPR)
Streptococcus equi subsp. zooepidemicus MGCS10565     (2 CRISPRs, 2 questionable structures)
Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601     (2 CRISPRs, 1 questionable structure)
Candidatus Phytoplasma australiense     (1 questionable structure)
Clostridium botulinum B str. Eklund 17B     (1 CRISPR)
Cupriavidus taiwanensis     (1 questionable structure)
Mycobacterium marinum M     (5 questionable structures)
Lactobacillus fermentum IFO 3956     (2 CRISPRs, 2 questionable structures)
Shigella boydii CDC 3083-94     (1 questionable structure)
Bordetella avium 197N
Beijerinckia indica subsp. indica ATCC 9039
Xylella fastidiosa M23     (1 questionable structure)
Brucella abortus S19
Opitutus terrae PB90-1     (1 questionable structure)
Streptomyces griseus subsp. griseus NBRC 13350     (3 CRISPRs, 7 questionable structures)
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'     (1 questionable structure)
Escherichia coli C str. ATCC 8739     (4 CRISPRs, 2 questionable structures)
Streptococcus pneumoniae CGSP14
Methylobacterium sp. 4-46     (3 CRISPRs, 10 questionable structures)
Clostridium botulinum B1 str. Okra     (9 CRISPRs)
Clostridium botulinum A3 str. Loch Maree     (5 CRISPRs, 2 questionable structures)
Corynebacterium urealyticum DSM 7109     (2 CRISPRs, 1 questionable structure)
Haemophilus somnus 2336
Exiguobacterium sibiricum 255-15     (1 CRISPR)
Escherichia coli str. K-12 substr. DH10B     (2 CRISPRs, 2 questionable structures)
Finegoldia magna ATCC 29328     (4 CRISPRs)
Thermoanaerobacter pseudethanolicus ATCC 33223     (7 CRISPRs)
Yersinia pestis Angola     (1 CRISPR)
Pseudomonas putida W619     (1 questionable structure)
Shewanella woodyi ATCC 51908     (2 questionable structures)
Leptothrix cholodnii SP-6     (1 CRISPR)
Burkholderia ambifaria MC40-6     (3 questionable structures)
Shewanella baltica OS195     (1 CRISPR, 1 questionable structure)
Thermoanaerobacter sp. X514     (4 CRISPRs)
Xylella fastidiosa M12     (1 questionable structure)
Thermotoga lettingae TMO     (2 CRISPRs)
Methylobacterium radiotolerans JCM 2831
Escherichia coli SECEC SMS-3-5     (1 CRISPR)
Cyanothece sp. ATCC 51142     (5 CRISPRs, 2 questionable structures)
Acholeplasma laidlawii PG-8A     (2 questionable structures)
Lysinibacillus sphaericus C3-41     (1 CRISPR, 1 questionable structure)
Staphylococcus aureus subsp. aureus USA300_TCH1516     (1 CRISPR, 3 questionable structures)
Shewanella halifaxensis HAW-EB4     (1 questionable structure)
Candidatus Desulforudis audaxviator MP104C     (4 CRISPRs, 2 questionable structures)
Streptococcus pneumoniae Hungary19A-6
Yersinia pseudotuberculosis YPIII     (3 CRISPRs)
Acinetobacter baumannii SDF     (1 questionable structure)
Acinetobacter baumannii AYE     (1 CRISPR, 3 questionable structures)
Methylobacterium extorquens PA1     (2 questionable structures)
Bordetella petrii DSM 12804
Caulobacter sp. K31     (1 questionable structure)
Microcystis aeruginosa NIES-843     (3 CRISPRs, 18 questionable structures)
Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7     (2 CRISPRs, 1 questionable structure)
Salmonella enterica subsp. arizonae serovar 62:z4,z23:--     (1 questionable structure)
Actinobacillus pleuropneumoniae serovar 3 str. JL03     (1 CRISPR)
Francisella philomiragia subsp. philomiragia ATCC 25017     (1 CRISPR)
Heliobacterium modesticaldum Ice1     (3 CRISPRs)
Pseudomonas putida GB-1
Chloroflexus aurantiacus J-10-fl     (3 CRISPRs, 5 questionable structures)
Bacillus weihenstephanensis KBAB4     (2 questionable structures)
Coxiella burnetii RSA 331     (1 questionable structure)
Neisseria meningitidis 053442     (5 CRISPRs, 3 questionable structures)
Bartonella tribocorum CIP 105476     (1 questionable structure)
Delftia acidovorans SPH-1     (1 CRISPR)
Petrotoga mobilis SJ95     (2 CRISPRs, 1 questionable structure)
Lactobacillus helveticus DPC 4571     (2 CRISPRs, 1 questionable structure)
Brucella suis ATCC 23445
Clostridium phytofermentans ISDg     (3 questionable structures)
Acaryochloris marina MBIC11017     (1 CRISPR, 2 questionable structures)
Candidatus Sulcia muelleri GWSS     (1 questionable structure)
Brucella canis ATCC 23365
Frankia sp. EAN1pec     (5 CRISPRs, 1 questionable structure)
Alkaliphilus oremlandii OhILAs     (1 questionable structure)
Shewanella pealeana ATCC 700345     (3 questionable structures)
Rickettsia massiliae MTU5
Azorhizobium caulinodans ORS 571
Candidatus Desulfococcus oleovorans Hxd3     (2 CRISPRs, 4 questionable structures)
Streptomyces coelicolor A3(2)     (1 CRISPR, 2 questionable structures)
Rhodococcus sp. RHA1
Nostoc sp. PCC 7120     (13 CRISPRs, 5 questionable structures)
Frankia sp. CcI3     (4 CRISPRs, 3 questionable structures)
Buchnera aphidicola str. APS (Acyrthosiphon pisum)
Synechococcus sp. CC9605
Synechococcus elongatus PCC 7942
Bradyrhizobium sp. ORS278     (1 questionable structure)
Chlamydophila pneumoniae AR39
Chlamydophila pneumoniae CWL029
Francisella tularensis subsp. holarctica
Neisseria meningitidis MC58     (2 CRISPRs, 5 questionable structures)
Neisseria meningitidis Z2491     (2 CRISPRs, 4 questionable structures)
Desulfitobacterium hafniense Y51     (6 CRISPRs, 1 questionable structure)
Chlamydophila pneumoniae J138
Prochlorococcus marinus str. AS9601     (1 questionable structure)
Escherichia coli O157:H7     (2 CRISPRs)
Magnetococcus sp. MC-1     (1 CRISPR, 1 questionable structure)
Staphylococcus aureus subsp. aureus Mu50     (2 CRISPRs, 6 questionable structures)
Staphylococcus aureus subsp. aureus N315     (2 CRISPRs, 7 questionable structures)
Dechloromonas aromatica RCB
Pseudomonas putida KT2440     (2 questionable structures)
Streptococcus pyogenes M1 GAS     (2 CRISPRs)
Streptococcus pyogenes str. Manfredo     (2 questionable structures)
Xylella fastidiosa 9a5c
Wolbachia endosymbiont of Drosophila melanogaster     (2 questionable structures)
Mycobacterium sp. MCS     (2 questionable structures)
Mycobacterium sp. JLS     (3 questionable structures)
Prochlorococcus marinus subsp. marinus str. CCMP1375
Prochlorococcus marinus str. MIT 9515     (1 questionable structure)
Prochlorococcus marinus str. MIT 9301
Prochlorococcus marinus str. NATL1A
Colwellia psychrerythraea 34H     (1 questionable structure)
Listeria monocytogenes EGD-e     (1 CRISPR, 3 questionable structures)
Streptococcus pneumoniae TIGR4
Streptococcus pneumoniae R6     (1 questionable structure)
Staphylococcus epidermidis RP62A     (1 CRISPR, 1 questionable structure)
Staphylococcus epidermidis ATCC 12228     (1 questionable structure)
Agrobacterium tumefaciens str. C58
Francisella tularensis subsp. tularensis SCHU S4
Desulfotalea psychrophila LSv54     (1 CRISPR, 3 questionable structures)
Chlamydophila pneumoniae TW-183
Xylella fastidiosa Temecula1     (1 questionable structure)
Streptococcus pyogenes MGAS8232
Alkalilimnicola ehrlichei MLHE-1     (1 CRISPR, 3 questionable structures)
Yersinia pestis KIM     (3 CRISPRs, 1 questionable structure)
Leptospira interrogans serovar Lai str. 56601     (1 questionable structure)
Mycobacterium sp. KMS     (4 questionable structures)
Fusobacterium nucleatum subsp. nucleatum ATCC 25586     (1 CRISPR)
Xanthomonas campestris pv. campestris str. ATCC 33913     (1 questionable structure)
Xanthomonas axonopodis pv. citri str. 306     (1 CRISPR, 1 questionable structure)
Caulobacter crescentus CB15     (1 questionable structure)
Campylobacter jejuni subsp. jejuni NCTC 11168     (1 CRISPR, 1 questionable structure)
Streptococcus pyogenes SSI-1
Chlorobium tepidum TLS     (2 CRISPRs, 2 questionable structures)
Campylobacter jejuni RM1221     (1 CRISPR, 1 questionable structure)
Clostridium perfringens str. 13     (2 questionable structures)
Clostridium perfringens ATCC 13124     (2 CRISPRs)
Nocardioides sp. JS614     (34 questionable structures)
Corynebacterium efficiens YS-314     (1 CRISPR, 1 questionable structure)
Vibrio vulnificus YJ016     (2 CRISPRs)
Staphylococcus aureus subsp. aureus MW2     (2 CRISPRs, 7 questionable structures)
Corynebacterium glutamicum ATCC 13032     (2 questionable structures)
Thermosynechococcus elongatus BP-1     (1 questionable structure)
Bacillus anthracis str. Ames     (2 questionable structures)
Shigella flexneri 2a str. 301     (1 CRISPR, 1 questionable structure)
Shigella flexneri 2a str. 2457T     (1 CRISPR, 1 questionable structure)
Streptococcus pyogenes MGAS315
Buchnera aphidicola str. Sg (Schizaphis graminum)
Escherichia coli CFT073     (2 questionable structures)
Clostridium thermocellum ATCC 27405     (5 CRISPRs)
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293     (1 questionable structure)
Saccharophagus degradans 2-40     (1 questionable structure)
Oenococcus oeni PSU-1
Trichodesmium erythraeum IMS101     (1 CRISPR, 18 questionable structures)
Tropheryma whipplei str. Twist
Candidatus Blochmannia floridanus
Acidobacteria bacterium Ellin345     (4 questionable structures)
Herminiimonas arsenicoxydans
Haemophilus somnus 129PT
Pseudomonas syringae pv. syringae B728a     (1 questionable structure)
Ehrlichia chaffeensis str. Arkansas
Streptococcus agalactiae A909     (1 CRISPR)
Pseudomonas fluorescens PfO-1
Bifidobacterium longum NCC2705     (1 questionable structure)
Desulfovibrio desulfuricans G20     (1 CRISPR)
Streptococcus agalactiae 2603V/R     (1 CRISPR)
Pseudomonas aeruginosa UCBPP-PA14     (2 CRISPRs)
Pseudomonas aeruginosa PAO1
Salmonella enterica subsp. enterica serovar Typhi Ty2     (1 CRISPR)
Streptococcus mutans UA159     (1 CRISPR)
Streptococcus agalactiae NEM316     (1 CRISPR, 1 questionable structure)
Shewanella oneidensis MR-1     (3 questionable structures)
Anaplasma phagocytophilum HZ     (1 questionable structure)
Clostridium tetani E88     (8 CRISPRs)
Yersinia pestis CO92     (3 CRISPRs)
Dehalococcoides sp. BAV1     (1 CRISPR)
Rhizobium leguminosarum bv. viciae 3841     (3 questionable structures)
Vibrio vulnificus CMCP6     (1 questionable structure)
Erwinia carotovora subsp. atroseptica SCRI1043     (3 CRISPRs, 1 questionable structure)
Tropheryma whipplei TW08/27     (1 questionable structure)
Chlamydophila abortus S26/3
Salmonella enterica subsp. enterica serovar Typhi str. CT18     (1 CRISPR)
Pseudomonas fluorescens Pf-5     (2 questionable structures)
Lactobacillus plantarum WCFS1
Oceanobacillus iheyensis HTE831     (3 questionable structures)
Mannheimia succiniciproducens MBEL55E     (3 CRISPRs)
Bacillus cereus ATCC 10987     (1 questionable structure)
Neorickettsia sennetsu str. Miyayama     (1 questionable structure)
Pseudomonas syringae pv. tomato str. DC3000
Vibrio parahaemolyticus RIMD 2210633     (1 CRISPR)
Bacillus subtilis subsp. subtilis str. 168
Aquifex aeolicus VF5     (11 CRISPRs)
Borrelia burgdorferi B31
Bradyrhizobium japonicum USDA 110
Brucella melitensis 16M     (1 questionable structure)
Buchnera aphidicola str. Bp (Baizongia pistaciae)
Enterococcus faecalis V583     (2 questionable structures)
Bacteroides thetaiotaomicron VPI-5482     (1 questionable structure)
Bacillus cereus ATCC 14579     (1 questionable structure)
Coxiella burnetii RSA 493
Streptomyces avermitilis MA-4680     (3 CRISPRs, 4 questionable structures)
Chlamydophila caviae GPIC
Hyphomonas neptunium ATCC 15444
Nitrosomonas europaea ATCC 19718     (2 CRISPRs, 1 questionable structure)
Yersinia pestis biovar Microtus str. 91001     (2 CRISPRs)
Acidovorax sp. JS42     (2 CRISPRs, 2 questionable structures)
Mycoplasma gallisepticum R     (2 CRISPRs, 2 questionable structures)
Haemophilus ducreyi 35000HP
Mycobacterium bovis AF2122/97     (2 CRISPRs, 1 questionable structure)
Solibacter usitatus Ellin6076     (3 questionable structures)
Anaplasma marginale str. St. Maries
Helicobacter hepaticus ATCC 51449
Geobacillus kaustophilus HTA426     (4 CRISPRs, 1 questionable structure)
Neisseria gonorrhoeae FA 1090     (3 CRISPRs, 1 questionable structure)
Porphyromonas gingivalis W83     (4 CRISPRs, 1 questionable structure)
Rhodopirellula baltica SH 1     (1 questionable structure)
Burkholderia mallei ATCC 23344
Chlamydia muridarum Nigg
Dehalococcoides ethenogenes 195
Deinococcus radiodurans R1     (1 questionable structure)
Geobacter sulfurreducens PCA     (2 CRISPRs)
Methylococcus capsulatus str. Bath     (2 CRISPRs)
Mycobacterium avium 104     (1 CRISPR, 6 questionable structures)
Photorhabdus luminescens subsp. laumondii TTO1     (6 CRISPRs, 3 questionable structures)
Mycoplasma genitalium G37
Treponema denticola ATCC 35405     (1 CRISPR)
Vibrio cholerae O1 biovar eltor str. N16961
Chromobacterium violaceum ATCC 12472     (4 CRISPRs)
Carboxydothermus hydrogenoformans Z-2901     (2 CRISPRs, 1 questionable structure)
Dichelobacter nodosus VCS1703A     (1 CRISPR, 1 questionable structure)
Myxococcus xanthus DK 1622     (4 CRISPRs, 4 questionable structures)
Silicibacter pomeroyi DSS-3
Nocardia farcinica IFM 10152     (3 CRISPRs, 5 questionable structures)
Gloeobacter violaceus PCC 7421     (1 questionable structure)
Ehrlichia ruminantium str. Welgevonden
Dehalococcoides sp. CBDB1     (1 CRISPR)
Corynebacterium diphtheriae NCTC 13129     (2 CRISPRs)
Bordetella bronchiseptica RB50     (2 questionable structures)
Bordetella parapertussis 12822     (2 questionable structures)
Bordetella pertussis Tohama I     (1 questionable structure)
Lactobacillus johnsonii NCC 533     (1 questionable structure)
Rickettsia typhi str. Wilmington
Rhodopseudomonas palustris CGA009     (1 questionable structure)
Psychrobacter arcticus 273-4     (1 questionable structure)
Bacillus anthracis str. Sterne     (2 questionable structures)
Bacillus anthracis str. 'Ames Ancestor'     (2 questionable structures)
Mycobacterium avium subsp. paratuberculosis K-10     (1 questionable structure)
Brucella abortus biovar 1 str. 9-941
Mycoplasma hyopneumoniae J     (1 questionable structure)
Mycoplasma hyopneumoniae 7448
Mycoplasma synoviae 53     (1 CRISPR)
Thermus thermophilus HB27     (10 CRISPRs)
Onion yellows phytoplasma OY-M
Ralstonia eutropha JMP134
Streptococcus thermophilus LMG 18311     (2 CRISPRs)
Candidatus Protochlamydia amoebophila UWE25     (1 questionable structure)
Chlamydophila felis Fe/C-56
Zymomonas mobilis subsp. mobilis ZM4     (3 CRISPRs)
Bdellovibrio bacteriovorus HD100
Pseudomonas syringae pv. phaseolicola 1448A     (2 questionable structures)
Moorella thermoacetica ATCC 39073     (2 CRISPRs, 1 questionable structure)
Methylobacillus flagellatus KT     (2 CRISPRs)
Mesoplasma florum L1     (1 questionable structure)
Listeria monocytogenes str. 4b F2365
Rubrobacter xylanophilus DSM 9941     (4 CRISPRs, 1 questionable structure)
Ralstonia metallidurans CH34     (1 questionable structure)
Burkholderia xenovorans LB400     (4 questionable structures)
Mesorhizobium sp. BNC1
Sinorhizobium meliloti 1021     (1 questionable structure)
Mesorhizobium loti MAFF303099
Kineococcus radiotolerans SRS30216
Ralstonia solanacearum GMI1000
Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130     (1 CRISPR, 5 questionable structures)
Propionibacterium acnes KPA171202
Mycoplasma mobile 163K     (1 CRISPR)
Synechococcus elongatus PCC 6301
Burkholderia vietnamiensis G4
Burkholderia sp. 383     (2 questionable structures)
Ehrlichia canis str. Jake
Rhodospirillum rubrum ATCC 11170     (12 CRISPRs, 2 questionable structures)
Cytophaga hutchinsonii ATCC 33406
Geobacter metallireducens GS-15     (1 CRISPR, 1 questionable structure)
Thermobifida fusca YX     (14 CRISPRs, 2 questionable structures)
Burkholderia thailandensis E264
Bacillus halodurans C-125     (5 CRISPRs)
Bacteroides fragilis NCTC 9343     (2 CRISPRs, 2 questionable structures)
Burkholderia pseudomallei K96243     (3 questionable structures)
Chlamydia trachomatis D/UW-3/CX
Clostridium acetobutylicum ATCC 824     (2 questionable structures)
Clostridium difficile 630     (12 CRISPRs, 3 questionable structures)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Lactococcus lactis subsp. cremoris SK11
Lactococcus lactis subsp. lactis Il1403
Listeria innocua Clip11262     (1 CRISPR, 1 questionable structure)
Mycobacterium leprae TN
Mycoplasma mycoides subsp. mycoides SC str. PG1
Mycoplasma penetrans HF-2     (1 questionable structure)
Mycoplasma pneumoniae M129     (1 CRISPR, 1 questionable structure)
Mycoplasma pulmonis UAB CTIP
Neisseria meningitidis FAM18     (2 CRISPRs, 4 questionable structures)
Pasteurella multocida subsp. multocida str. Pm70     (4 CRISPRs)
Rhodobacter sphaeroides 2.4.1     (1 questionable structure)
Rickettsia conorii str. Malish 7     (1 questionable structure)
Rickettsia prowazekii str. Madrid E
Staphylococcus aureus RF122     (5 questionable structures)
Thermoanaerobacter tengcongensis MB4     (3 CRISPRs)
Ureaplasma parvum serovar 3 str. ATCC 700970
Wolinella succinogenes DSM 1740     (2 CRISPRs)
Yersinia pseudotuberculosis IP 32953     (3 CRISPRs, 3 questionable structures)
Pediococcus pentosaceus ATCC 25745
Bacillus licheniformis ATCC 14580
Novosphingobium aromaticivorans DSM 12444
Staphylococcus haemolyticus JCSC1435     (1 questionable structure)
Leifsonia xyli subsp. xyli str. CTCB07
Bacillus thuringiensis serovar konkukian str. 97-27     (1 questionable structure)
Haemophilus influenzae 86-028NP     (1 questionable structure)
Staphylococcus aureus subsp. aureus MRSA252     (1 CRISPR, 3 questionable structures)
Staphylococcus aureus subsp. aureus MSSA476     (1 CRISPR, 9 questionable structures)
Bartonella quintana str. Toulouse
Bartonella henselae str. Houston-1
Idiomarina loihiensis L2TR
Streptococcus pyogenes MGAS10394
Bradyrhizobium sp. BTAi1     (1 questionable structure)
Bacillus cereus E33L     (1 questionable structure)
Chlorobium phaeobacteroides DSM 266     (5 CRISPRs, 1 questionable structure)
Prosthecochloris vibrioformis DSM 265     (2 CRISPRs)
Citrobacter koseri ATCC BAA-895     (1 CRISPR, 5 questionable structures)
Arthrobacter aurescens TC1     (7 questionable structures)
Anaeromyxobacter dehalogenans 2CP-C     (5 questionable structures)
Chromohalobacter salexigens DSM 3043     (2 CRISPRs)
Arthrobacter sp. FB24     (2 questionable structures)
Jannaschia sp. CCS1
Clostridium beijerinckii NCIMB 8052     (2 questionable structures)
Gluconobacter oxydans 621H
Candidatus Blochmannia pennsylvanicus str. BPEN
Xanthomonas oryzae pv. oryzae KACC10331     (1 CRISPR)
Silicibacter sp. TM1040
Thiobacillus denitrificans ATCC 25259
Symbiobacterium thermophilum IAM 14863     (3 CRISPRs)
Wolbachia endosymbiont strain TRS of Brugia malayi
Rickettsia canadensis str. McKiel
Rickettsia akari str. Hartford
Streptococcus pyogenes MGAS5005     (2 CRISPRs)
Alkaliphilus metalliredigens QYMF     (2 CRISPRs, 2 questionable structures)
Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150     (2 CRISPRs, 1 questionable structure)
Mycoplasma hyopneumoniae 232     (1 questionable structure)
Bacteroides fragilis YCH46     (1 CRISPR)
Polaromonas sp. JS666     (7 questionable structures)
Legionella pneumophila str. Lens     (3 CRISPRs)
Legionella pneumophila str. Paris     (1 CRISPR)
Photobacterium profundum SS9     (2 CRISPRs, 1 questionable structure)
Streptococcus thermophilus CNRZ1066     (1 CRISPR)
Shigella dysenteriae Sd197     (1 questionable structure)
Shigella boydii Sb227     (1 CRISPR, 1 questionable structure)
Shigella sonnei Ss046     (2 CRISPRs, 2 questionable structures)
Thermus thermophilus HB8     (11 CRISPRs)
Ehrlichia ruminantium str. Gardel
Corynebacterium jeikeium K411     (1 CRISPR, 1 questionable structure)
Salinibacter ruber DSM 13855
Polynucleobacter sp. QLW-P1DMWA-1
Vibrio fischeri ES114
Erythrobacter litoralis HTCC2594     (1 questionable structure)
Lactobacillus sakei subsp. sakei 23K
Xanthomonas campestris pv. campestris str. 8004     (1 questionable structure)
Chlamydia trachomatis A/HAR-13
Rickettsia felis URRWXCal2
Bacillus cereus subsp. cytotoxis NVH 391-98     (2 CRISPRs, 1 questionable structure)
Bacillus pumilus SAFR-032
Rhodopseudomonas palustris BisA53     (2 questionable structures)
Rhodopseudomonas palustris BisB18     (1 CRISPR, 1 questionable structure)
Rhodopseudomonas palustris BisB5     (1 CRISPR, 1 questionable structure)
Rhodopseudomonas palustris HaA2     (2 questionable structures)
Xanthomonas campestris pv. vesicatoria str. 85-10     (2 questionable structures)
Synechococcus sp. RCC307
Synechococcus sp. CC9902     (1 questionable structure)
Thiomicrospira crunogena XCL-2
Sphingopyxis alaskensis RB2256
Shewanella denitrificans OS217
Shewanella frigidimarina NCIMB 400
Paracoccus denitrificans PD1222     (1 CRISPR, 2 questionable structures)
Shewanella putrefaciens CN-32     (1 CRISPR, 1 questionable structure)
Pelodictyon luteolum DSM 273     (1 CRISPR)
Streptococcus pyogenes MGAS6180     (2 CRISPRs, 1 questionable structure)
Deinococcus geothermalis DSM 11300     (6 CRISPRs)
Burkholderia pseudomallei 1710b     (1 questionable structure)
Burkholderia pseudomallei 668
Burkholderia mallei SAVP1
Burkholderia mallei NCTC 10247
Synechococcus sp. WH 7803
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67     (2 CRISPRs)
Synechococcus sp. JA-3-3Ab     (9 CRISPRs, 1 questionable structure)
Synechococcus sp. JA-2-3B'a(2-13)     (6 CRISPRs, 4 questionable structures)
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365     (1 CRISPR, 1 questionable structure)
Lactobacillus casei ATCC 334     (1 CRISPR, 2 questionable structures)
Aster yellows witches'-broom phytoplasma AYWB
Streptococcus thermophilus LMD-9     (3 CRISPRs, 1 questionable structure)
Nitrobacter hamburgensis X14     (1 questionable structure)
Nitrobacter winogradskyi Nb-255     (1 CRISPR, 2 questionable structures)
Nitrosococcus oceani ATCC 19707     (1 CRISPR)
Nitrosospira multiformis ATCC 25196
Shewanella loihica PV-4     (1 questionable structure)
Lactobacillus gasseri ATCC 33323
Shewanella baltica OS155     (2 questionable structures)
Shewanella amazonensis SB2B     (4 questionable structures)
Thiomicrospira denitrificans ATCC 33889     (1 questionable structure)
Bacillus amyloliquefaciens FZB42
Frankia alni ACN14a     (7 CRISPRs, 4 questionable structures)
Pseudoalteromonas haloplanktis TAC125     (1 questionable structure)
Escherichia coli E24377A     (3 CRISPRs)
Escherichia coli HS     (3 CRISPRs, 2 questionable structures)
Burkholderia cenocepacia AU 1054
Burkholderia cenocepacia HI2424
Nitrosomonas eutropha C91     (3 CRISPRs)
Psychrobacter cryohalolentis K5
Syntrophomonas wolfei subsp. wolfei str. Goettingen     (5 CRISPRs, 1 questionable structure)
Syntrophobacter fumaroxidans MPOB     (2 CRISPRs, 10 questionable structures)
Candidatus Pelagibacter ubique HTCC1062
Rickettsia bellii RML369-C     (2 questionable structures)
Mycobacterium tuberculosis F11     (2 CRISPRs, 1 questionable structure)
Pelobacter carbinolicus DSM 2380     (1 CRISPR)
Pelobacter propionicus DSM 2379     (2 CRISPRs, 1 questionable structure)
Rhodoferax ferrireducens T118     (2 CRISPRs, 4 questionable structures)
Burkholderia cepacia AMMD     (1 CRISPR, 2 questionable structures)
Actinobacillus succinogenes 130Z     (2 CRISPRs)
Mycoplasma capricolum subsp. capricolum ATCC 27343     (1 questionable structure)
Chlorobium chlorochromatii CaD3     (2 CRISPRs)
Corynebacterium glutamicum R     (1 CRISPR)
Magnetospirillum magneticum AMB-1
Xanthomonas oryzae pv. oryzae MAFF 311018     (1 CRISPR)
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305
Pseudoalteromonas atlantica T6c     (1 questionable structure)
Sodalis glossinidius str. 'morsitans'     (1 questionable structure)
Mycoplasma agalactiae PG2
Rhizobium etli CFN 42
Rhodobacter sphaeroides ATCC 17029     (1 questionable structure)
Rhodobacter sphaeroides ATCC 17025     (1 questionable structure)
Psychrobacter sp. PRwf-1     (1 CRISPR)
Halorhodospira halophila SL1     (2 CRISPRs, 1 questionable structure)
Desulfotomaculum reducens MI-1     (5 CRISPRs)
Acidiphilium cryptum JF-5     (2 CRISPRs, 1 questionable structure)
Hahella chejuensis KCTC 2396     (2 CRISPRs, 1 questionable structure)
Yersinia pseudotuberculosis IP 31758     (2 CRISPRs)
Mycobacterium gilvum PYR-GCK     (1 questionable structure)
Mycobacterium vanbaalenii PYR-1     (5 questionable structures)
Marinobacter aquaeolei VT8
Geobacter uraniumreducens Rf4     (2 CRISPRs, 3 questionable structures)
Acidothermus cellulolyticus 11B     (1 CRISPR, 7 questionable structures)
Caldicellulosiruptor saccharolyticus DSM 8903     (13 CRISPRs)
Shewanella sp. W3-18-1     (2 CRISPRs, 5 questionable structures)
Pseudomonas putida F1     (1 questionable structure)
Campylobacter jejuni subsp. jejuni 81-176
Leptospira borgpetersenii serovar Hardjo-bovis L550     (1 questionable structure)
Leptospira borgpetersenii serovar Hardjo-bovis JB197     (1 questionable structure)
Orientia tsutsugamushi Boryong     (2 questionable structures)
Burkholderia pseudomallei 1106a     (1 questionable structure)
Helicobacter pylori HPAG1     (1 questionable structure)
Psychromonas ingrahamii 37     (1 CRISPR, 22 questionable structures)
Roseiflexus sp. RS-1     (14 CRISPRs, 23 questionable structures)
Brucella melitensis biovar Abortus 2308
Staphylococcus aureus subsp. aureus JH9     (2 CRISPRs, 6 questionable structures)
Staphylococcus aureus subsp. aureus JH1     (2 CRISPRs, 6 questionable structures)
Bartonella bacilliformis KC583
Yersinia pestis Antiqua     (3 CRISPRs, 1 questionable structure)
Campylobacter concisus 13826     (1 questionable structure)
Campylobacter curvus 525.92     (2 CRISPRs, 1 questionable structure)
Campylobacter fetus subsp. fetus 82-40     (2 CRISPRs)
Campylobacter hominis ATCC BAA-381     (1 CRISPR)
Campylobacter jejuni subsp. doylei 269.97     (1 CRISPR, 1 questionable structure)
Escherichia coli 536     (1 CRISPR, 5 questionable structures)
Lactobacillus salivarius subsp. salivarius     (1 CRISPR, 1 questionable structure)
Lawsonia intracellularis PHE/MN1-00     (1 questionable structure)
Escherichia coli UTI89     (2 CRISPRs, 3 questionable structures)
Polaromonas naphthalenivorans CJ2     (3 questionable structures)
Sinorhizobium medicae WSM419
Arcobacter butzleri RM4018
Staphylococcus aureus subsp. aureus USA300     (1 CRISPR, 2 questionable structures)
Bifidobacterium adolescentis ATCC 15703     (2 CRISPRs, 3 questionable structures)
Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis
Salinispora tropica CNB-440     (3 CRISPRs)
Pelotomaculum thermopropionicum SI     (5 CRISPRs)
Streptococcus pyogenes MGAS9429     (1 CRISPR)
Streptococcus pyogenes MGAS10270     (2 CRISPRs)
Streptococcus pyogenes MGAS2096     (1 CRISPR)
Streptococcus pyogenes MGAS10750     (1 CRISPR)
Buchnera aphidicola str. Cc (Cinara cedri)
Streptococcus pneumoniae D39     (1 questionable structure)
Shigella flexneri 5 str. 8401     (1 CRISPR, 2 questionable structures)
Baumannia cicadellinicola str. Hc (Homalodisca coagulata)
Haemophilus influenzae PittEE     (1 questionable structure)
Haemophilus influenzae PittGG
Janthinobacterium sp. Marseille
Roseobacter denitrificans OCh 114
Flavobacterium johnsoniae UW101
Yersinia pestis Nepal516     (3 CRISPRs)
Pseudomonas stutzeri A1501     (1 CRISPR)
Aeromonas hydrophila subsp. hydrophila ATCC 7966     (9 questionable structures)
Ralstonia eutropha H16
Pseudomonas aeruginosa PA7     (2 CRISPRs, 1 questionable structure)
Fervidobacterium nodosum Rt17-B1     (2 CRISPRs)
Aeromonas salmonicida subsp. salmonicida     (2 questionable structures)
Helicobacter acinonychis str. Sheeba
Roseiflexus castenholzii DSM 13941     (7 CRISPRs, 35 questionable structures)
Pseudomonas entomophila L48     (1 questionable structure)
Listeria welshimeri serovar 6b str. SLCC5334
Clostridium novyi NT     (2 CRISPRs, 2 questionable structures)
Escherichia coli O157:H7 str. Sakai     (2 CRISPRs)
Yersinia pestis Pestoides F     (3 CRISPRs)
Nitratiruptor sp. SB155-2
Sulfurovum sp. NBC37-1     (3 questionable structures)
Lactobacillus brevis ATCC 367     (2 CRISPRs)
Candidatus Carsonella ruddii PV
Streptococcus sanguinis SK36     (3 CRISPRs, 1 questionable structure)
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842     (1 CRISPR, 2 questionable structures)
Thermotoga petrophila     (8 CRISPRs, 1 questionable structure)
Thermosipho melanesiensis BI429     (5 CRISPRs)
Granulibacter bethesdensis CGDNIH1     (4 CRISPRs)
Streptococcus suis 05ZYH33     (1 questionable structure)
Streptococcus suis 98HAH33     (1 questionable structure)
Verminephrobacter eiseniae EF01-2     (3 CRISPRs)
Desulfovibrio vulgaris subsp. vulgaris DP4     (1 CRISPR, 1 questionable structure)
Rickettsia bellii OSU 85-389     (1 questionable structure)
Rickettsia rickettsii str. 'Sheila Smith'
Sphingomonas wittichii RW1     (1 questionable structure)
Francisella tularensis subsp. holarctica OSU18
Francisella tularensis subsp. tularensis FSC 198
Yersinia enterocolitica subsp. enterocolitica 8081
Alcanivorax borkumensis SK2
Maricaulis maris MCS10
Acidovorax avenae subsp. citrulli AAC00-1
Pseudomonas mendocina ymp     (2 CRISPRs)
Serratia proteamaculans 568     (1 questionable structure)
Enterobacter sp. 638     (2 CRISPRs, 6 questionable structures)
Acinetobacter baumannii ATCC 17978     (1 questionable structure)
Marinomonas sp. MWYL1     (2 CRISPRs)
Legionella pneumophila str. Corby     (2 questionable structures)
Francisella tularensis subsp. novicida U112     (2 CRISPRs, 2 questionable structures)
Flavobacterium psychrophilum JIP02/86     (1 CRISPR, 2 questionable structures)
Parvibaculum lavamentivorans DS-1     (1 CRISPR)
Shewanella baltica OS185     (1 CRISPR)
Anaeromyxobacter sp. Fw109-5     (1 questionable structure)
Saccharopolyspora erythraea NRRL 2338     (4 CRISPRs, 3 questionable structures)
Escherichia coli APEC O1     (2 CRISPRs, 3 questionable structures)
Campylobacter jejuni subsp. jejuni 81116     (1 CRISPR, 1 questionable structure)
Mycobacterium bovis BCG str. Pasteur 1173P2     (2 CRISPRs, 3 questionable structures)
Gramella forsetii KT0803
Burkholderia mallei NCTC 10229
Bacillus thuringiensis str. Al Hakam     (1 CRISPR, 4 questionable structures)
Candidatus Vesicomyosocius okutanii HA
Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)
Clostridium botulinum A str. ATCC 3502     (8 CRISPRs)
Actinobacillus pleuropneumoniae L20     (1 CRISPR)
Lactococcus lactis subsp. cremoris MG1363
Staphylococcus aureus subsp. aureus Mu3     (2 CRISPRs, 6 questionable structures)
Francisella tularensis subsp. tularensis WY96-3418
Mycobacterium tuberculosis H37Ra     (2 CRISPRs, 1 questionable structure)
Geobacillus thermodenitrificans NG80-2     (3 CRISPRs, 1 questionable structure)
Methylibium petroleiphilum PM1     (2 questionable structures)
Shewanella sediminis HAW-EB3     (2 questionable structures)
Staphylococcus aureus subsp. aureus str. Newman     (1 CRISPR, 3 questionable structures)
Clostridium kluyveri DSM 555     (5 CRISPRs)
Bacteroides vulgatus ATCC 8482
Parabacteroides distasonis ATCC 8503     (1 CRISPR)
Ochrobactrum anthropi ATCC 49188     (1 questionable structure)
Clostridium botulinum A str. ATCC 19397 "Hall"     (8 CRISPRs, 2 questionable structures)
Clostridium botulinum F str. Langeland     (12 CRISPRs, 1 questionable structure)
Clavibacter michiganensis subsp. michiganensis NCPPB 382     (1 questionable structure)
Brucella ovis ATCC 25840
Francisella tularensis subsp. holarctica FTA
Streptococcus gordonii str. Challis substr. CH1     (1 CRISPR, 1 questionable structure)
Syntrophus aciditrophicus SB     (2 CRISPRs, 1 questionable structure)
Prochlorococcus marinus subsp. pastoris str. CCMP1986
Prochlorococcus marinus str. NATL2A
Prochlorococcus marinus str. MIT 9303     (2 questionable structures)
Shewanella sp. MR-4     (1 questionable structure)
Shewanella sp. MR-7
Azoarcus sp. BH72     (3 questionable structures)
Acinetobacter sp. ADP1     (3 CRISPRs)
Synechococcus sp. CC9311
Bacillus clausii KSM-K16     (8 CRISPRs, 1 questionable structure)
Haemophilus influenzae Rd KW20     (1 questionable structure)
Prochlorococcus marinus str. MIT 9312
Prochlorococcus marinus str. MIT 9313
Azoarcus sp. EbN1     (5 CRISPRs)
Xanthobacter autotrophicus Py2     (1 questionable structure)
Mycobacterium tuberculosis CDC1551     (2 CRISPRs, 1 questionable structure)
Synechococcus sp. WH 8102
Helicobacter pylori J99
Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough     (1 CRISPR, 1 questionable structure)
Prochlorococcus marinus str. MIT 9215
Staphylococcus aureus subsp. aureus NCTC 8325     (1 CRISPR, 2 questionable structures)
Staphylococcus aureus subsp. aureus COL     (2 CRISPRs, 3 questionable structures)
Shewanella sp. ANA-3     (1 CRISPR)
Salmonella typhimurium LT2     (3 CRISPRs)

Archea

Methanobrevibacter sp. AbM4     (1 CRISPR, 5 questionable structures)
Sulfolobus islandicus LAL14/1
Methanomassiliicoccus sp. Mx1-Issoire     (2 CRISPRs, 1 questionable structure)
Salinarchaeum sp. Harcht-Bsk1
Archaeoglobus sulfaticallidus PM70-1     (2 CRISPRs)
Methanosarcina mazei Tuc01     (3 CRISPRs, 8 questionable structures)
Natronomonas moolapensis 8.8.11     (4 questionable structures)
Sulfolobus acidocaldarius N8     (4 CRISPRs)
Sulfolobus acidocaldarius Ron12/I     (4 CRISPRs)
Caldisphaera lagunensis DSM 15908     (3 questionable structures)
Methanoregula formicicum SMSP     (2 CRISPRs, 2 questionable structures)
Aciduliprofundum sp. MAR08-339     (2 CRISPRs, 1 questionable structure)
Natronococcus occultus SP4     (1 CRISPR, 9 questionable structures)
Halovivax ruber XH-70
Natrinema pellirubrum DSM 15624     (1 CRISPR, 1 questionable structure)
Natronobacterium gregoryi SP2     (1 CRISPR, 2 questionable structures)
Methanomethylovorans hollandica DSM 15978     (3 CRISPRs)
Methanolobus psychrophilus R15     (2 questionable structures)
Pyrococcus furiosus COM1     (8 CRISPRs)
Methanoculleus bourgensis MS2     (1 CRISPR, 3 questionable structures)
Thermococcus sp. CL1     (11 CRISPRs, 1 questionable structure)
Natrinema sp. J7-2     (3 CRISPRs)
Haloferax mediterranei ATCC 33500     (6 CRISPRs, 2 questionable structures)
Pyrococcus sp. ST04     (8 CRISPRs)
Thermogladius sp. 1633     (2 CRISPRs)
Sulfolobus solfataricus 98/2     (4 CRISPRs, 5 questionable structures)
Desulfurococcus fermentans DSM 16532     (1 CRISPR)
Sulfolobus islandicus HVE10/4     (4 CRISPRs, 2 questionable structures)
Methanosaeta harundinacea 6Ac     (1 CRISPR, 4 questionable structures)
Fervidicoccus fontis Kam940     (4 CRISPRs, 2 questionable structures)
Haloquadratum walsbyi C23     (3 CRISPRs, 1 questionable structure)
Sulfolobus islandicus REY15A     (4 CRISPRs, 2 questionable structures)
Methanocella sp. HZ254     (1 CRISPR, 4 questionable structures)
Pyrobaculum oguniense TE7     (5 CRISPRs)
Pyrobaculum sp. 1860     (8 CRISPRs, 1 questionable structure)
Thermococcus sp. AM4     (3 CRISPRs)
Haloarcula hispanica ATCC 33960     (1 CRISPR)
Pyrolobus fumarii 1A     (7 CRISPRs)
halophilic archaeon DL31     (2 CRISPRs, 2 questionable structures)
Thermoproteus tenax Kra 1     (7 CRISPRs)
Methanobacterium sp. SWAN-1     (1 CRISPR, 1 questionable structure)
Metallosphaera cuprina Ar-4     (2 CRISPRs, 1 questionable structure)
Thermococcus sp. 4557     (5 CRISPRs)
Methanococcus maripaludis X1     (1 CRISPR, 1 questionable structure)
Pyrococcus sp. NA2     (2 CRISPRs)
Pyrococcus yayanosii CH1     (7 CRISPRs)
Methanothermococcus okinawensis IH1     (8 CRISPRs, 2 questionable structures)
Methanosalsum zhilinae DSM 4017     (1 CRISPR, 1 questionable structure)
Archaeoglobus veneficus SNP6     (2 CRISPRs)
Halopiger xanaduensis SH-6     (1 questionable structure)
Methanotorris igneus Kol 5     (25 CRISPRs)
Acidianus hospitalis W1     (6 CRISPRs, 3 questionable structures)
Methanosaeta concilii GP-6     (6 CRISPRs)
Thermoproteus uzoniensis 768-20
Methanobacterium sp. AL-21     (1 CRISPR, 1 questionable structure)
Vulcanisaeta moutnovskia 768-28     (4 CRISPRs)
Cenarchaeum symbiosum A
Halogeometricum borinquense DSM 11551     (1 CRISPR, 4 questionable structures)
Thermococcus barophilus MP     (4 CRISPRs)
Desulfurococcus mucosus DSM 2162     (4 CRISPRs)
Methanoplanus petrolearius DSM 11571     (1 questionable structure)
Methanothermus fervidus DSM 2088
Vulcanisaeta distributa DSM 14429     (9 CRISPRs)
Ignisphaera aggregans DSM 17230     (8 CRISPRs)
Methanohalobium evestigatum Z-7303     (1 questionable structure)
Acidilobus saccharovorans 345-15     (7 CRISPRs)
Halalkalicoccus jeotgali B3
Methanothermobacter marburgensis str. Marburg     (2 CRISPRs, 11 questionable structures)
uncultured methanogenic archaeon RC-I
Methanococcus voltae A3     (3 CRISPRs, 2 questionable structures)
Methanohalophilus mahii DSM 5219
Methanocaldococcus infernus ME     (14 CRISPRs)
Staphylothermus hellenicus DSM 12710     (6 CRISPRs, 2 questionable structures)
Thermosphaera aggregans DSM 11486     (1 CRISPR)
Haloferax volcanii DS2     (3 CRISPRs, 3 questionable structures)
Natrialba magadii ATCC 43099     (2 CRISPRs, 3 questionable structures)
Ferroglobus placidus DSM 10642     (6 CRISPRs, 1 questionable structure)
Methanobrevibacter ruminantium M1     (3 CRISPRs, 22 questionable structures)
Methanocaldococcus sp. FS406-22     (23 CRISPRs, 2 questionable structures)
Sulfolobus islandicus L.D.8.5     (4 CRISPRs, 2 questionable structures)
Aciduliprofundum boonei T469     (2 CRISPRs)
Methanocella paludicola SANAE     (4 questionable structures)
Haloterrigena turkmenica DSM 5511     (7 questionable structures)
Archaeoglobus profundus DSM 5631
Methanocaldococcus vulcanius M7     (20 CRISPRs, 1 questionable structure)
Methanosarcina barkeri str. fusaro     (4 CRISPRs, 15 questionable structures)
Halomicrobium mukohataei DSM 12286     (2 CRISPRs, 5 questionable structures)
Halorhabdus utahensis DSM 12940     (1 CRISPR)
Methanocaldococcus fervens AG86     (8 CRISPRs)
Thermococcus gammatolerans EJ3     (3 CRISPRs)
Thermococcus sibiricus MM 739     (1 CRISPR)
Sulfolobus islandicus Y.N.15.51     (3 CRISPRs)
Sulfolobus islandicus L.S.2.15     (4 CRISPRs, 1 questionable structure)
Sulfolobus islandicus Y.G.57.14     (2 CRISPRs, 1 questionable structure)
Sulfolobus islandicus M.16.4     (2 CRISPRs, 1 questionable structure)
Sulfolobus islandicus M.14.25     (3 CRISPRs, 2 questionable structures)
Sulfolobus islandicus M.16.27     (3 CRISPRs, 1 questionable structure)
Halorubrum lacusprofundi ATCC 49239     (5 CRISPRs, 2 questionable structures)
Desulfurococcus kamchatkensis 1221n     (2 CRISPRs)
Candidatus Methanosphaerula palustris E1-9c     (2 CRISPRs, 4 questionable structures)
Thermococcus onnurineus NA1     (6 CRISPRs)
Pyrobaculum aerophilum str. IM2     (6 CRISPRs)
Candidatus Korarchaeum cryptofilum OPF8     (2 CRISPRs, 2 questionable structures)
Thermoproteus neutrophilus V24Sta     (10 CRISPRs)
Halobacterium salinarum R1     (1 questionable structure)
Nitrosopumilus maritimus SCM1     (1 CRISPR, 1 questionable structure)
Methanococcus maripaludis C6
Pyrococcus furiosus DSM 3638     (8 CRISPRs)
Methanothermobacter thermautotrophicus str. Delta H     (2 CRISPRs, 12 questionable structures)
Methanosarcina acetivorans C2A     (5 CRISPRs, 5 questionable structures)
Methanopyrus kandleri AV19     (5 CRISPRs)
Methanosarcina mazei Go1     (4 CRISPRs, 4 questionable structures)
Archaeoglobus fulgidus DSM 4304     (3 CRISPRs)
Nanoarchaeum equitans Kin4-M     (2 CRISPRs)
Methanocaldococcus jannaschii DSM 2661     (20 CRISPRs)
Methanococcoides burtonii DSM 6242     (2 CRISPRs, 1 questionable structure)
Picrophilus torridus DSM 9790     (4 CRISPRs)
Methanococcus maripaludis S2
Aeropyrum pernix K1     (3 CRISPRs, 1 questionable structure)
Haloarcula marismortui ATCC 43049     (4 CRISPRs, 2 questionable structures)
Pyrococcus abyssi GE5     (4 CRISPRs)
Sulfolobus solfataricus P2     (7 CRISPRs, 3 questionable structures)
Sulfolobus tokodaii str. 7     (5 CRISPRs, 3 questionable structures)
Thermoplasma acidophilum DSM 1728     (1 CRISPR, 1 questionable structure)
Thermoplasma volcanium GSS1     (2 CRISPRs)
Methanospirillum hungatei JF-1     (7 CRISPRs)
Sulfolobus acidocaldarius DSM 639     (4 CRISPRs)
Methanosphaera stadtmanae DSM 3091     (3 CRISPRs)
Pyrobaculum arsenaticum DSM 13514     (4 CRISPRs)
Natronomonas pharaonis DSM 2160     (4 CRISPRs, 1 questionable structure)
Methanosaeta thermophila PT     (2 CRISPRs, 17 questionable structures)
Haloquadratum walsbyi DSM 16790     (2 CRISPRs)
Methanoculleus marisnigri JR1     (1 CRISPR, 1 questionable structure)
Thermofilum pendens Hrk 5     (10 CRISPRs)
Pyrobaculum islandicum DSM 4184     (5 CRISPRs)
Metallosphaera sedula DSM 5348     (4 CRISPRs)
Staphylothermus marinus F1     (11 CRISPRs)
Methanococcus maripaludis C5     (1 CRISPR, 4 questionable structures)
Methanococcus vannielii SB     (2 CRISPRs)
Methanocorpusculum labreanum Z     (1 CRISPR, 4 questionable structures)
Pyrobaculum calidifontis JCM 11548     (7 CRISPRs)
Hyperthermus butylicus DSM 5456     (2 CRISPRs)
Methanococcus aeolicus Nankai-3     (1 CRISPR, 1 questionable structure)
Methanobrevibacter smithii ATCC 35061     (1 CRISPR, 4 questionable structures)
Methanococcus maripaludis C7
Ignicoccus hospitalis KIN4/I     (12 CRISPRs)
Candidatus Methanoregula boonei 6A8
Halobacterium sp. NRC-1
Thermococcus kodakarensis KOD1     (3 CRISPRs)
Pyrococcus horikoshii OT3     (6 CRISPRs)