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Data Summary

Genomes analysed CRISPRs found (*)
Archea 118 470(100)
Bacteria 1582 2199(734)
Total 1700 2669(834)

*number of convincing CRISPR structures (number of genomes with such CRISPR)

Database status:
Last update : 2012-04-23

Contact:
Christine POURCEL


Genomes analysed CRISPRs found Strains with convincing CRISPR(s) Strains devoid of detectable CRISPRs
Archea 118 470 100 18
Bacteria 1582 2199 734 463
Total 1700 2669 834 481

Click on strain name to get more information.

Bacteria

'Nostoc azollae' 0708     (1 CRISPR, 3 questionable structures)
Acaryochloris marina MBIC11017     (1 CRISPR, 2 questionable structures)
Acetobacter pasteurianus IFO 3283-01     (1 CRISPR)
Acetobacter pasteurianus IFO 3283-01-42C     (1 CRISPR)
Acetobacter pasteurianus IFO 3283-03     (1 CRISPR)
Acetobacter pasteurianus IFO 3283-07     (1 CRISPR)
Acetobacter pasteurianus IFO 3283-12     (1 CRISPR)
Acetobacter pasteurianus IFO 3283-22     (1 CRISPR)
Acetobacter pasteurianus IFO 3283-26     (1 CRISPR)
Acetobacter pasteurianus IFO 3283-32     (1 CRISPR)
Acetobacterium woodii DSM 1030     (1 CRISPR)
Acetohalobium arabaticum DSM 5501     (1 CRISPR)
Acholeplasma laidlawii PG-8A     (2 questionable structures)
Achromobacter xylosoxidans A8     (1 questionable structure)
Acidaminococcus fermentans DSM 20731     (1 CRISPR, 3 questionable structures)
Acidaminococcus intestini RyC-MR95     (1 CRISPR)
Acidimicrobium ferrooxidans DSM 10331     (2 CRISPRs)
Acidiphilium cryptum JF-5     (2 CRISPRs, 1 questionable structure)
Acidiphilium multivorum AIU301
Acidithiobacillus caldus SM-1     (3 CRISPRs, 1 questionable structure)
Acidithiobacillus ferrivorans SS3
Acidithiobacillus ferrooxidans ATCC 23270     (4 CRISPRs, 2 questionable structures)
Acidithiobacillus ferrooxidans ATCC 53993     (2 questionable structures)
Acidobacteria bacterium Ellin345     (4 questionable structures)
Acidobacterium capsulatum ATCC 51196     (1 CRISPR)
Acidobacterium sp. MP5ACTX9     (3 questionable structures)
Acidothermus cellulolyticus 11B     (1 CRISPR, 7 questionable structures)
Acidovorax avenae subsp. avenae ATCC 19860     (6 CRISPRs)
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42     (2 CRISPRs, 2 questionable structures)
Acinetobacter baumannii 1656-2
Acinetobacter baumannii AB0057     (1 CRISPR, 2 questionable structures)
Acinetobacter baumannii AB307-0294     (1 CRISPR, 3 questionable structures)
Acinetobacter baumannii ACICU
Acinetobacter baumannii ATCC 17978     (1 questionable structure)
Acinetobacter baumannii AYE     (1 CRISPR, 3 questionable structures)
Acinetobacter baumannii MDR-ZJ06
Acinetobacter baumannii SDF     (1 questionable structure)
Acinetobacter calcoaceticus PHEA-2     (1 questionable structure)
Acinetobacter sp. ADP1     (3 CRISPRs)
Acinetobacter sp. DR1
Actinobacillus pleuropneumoniae L20     (1 CRISPR)
Actinobacillus pleuropneumoniae serovar 3 str. JL03     (1 CRISPR)
Actinobacillus pleuropneumoniae serovar 7 str. AP76     (1 CRISPR)
Actinobacillus succinogenes 130Z     (2 CRISPRs)
Actinoplanes missouriensis 431     (3 CRISPRs, 14 questionable structures)
Actinosynnema mirum DSM 43827     (3 questionable structures)
Aerococcus urinae ACS-120-V-Col10a
Aeromonas hydrophila subsp. hydrophila ATCC 7966     (9 questionable structures)
Aeromonas salmonicida subsp. salmonicida     (2 questionable structures)
Aeromonas veronii B565     (5 questionable structures)
Aggregatibacter actinomycetemcomitans ANH9381     (1 CRISPR)
Aggregatibacter actinomycetemcomitans D11S-1
Aggregatibacter aphrophilus NJ8700     (1 CRISPR)
Aggregatibacter phage S1249
Agrobacterium radiobacter K84
Agrobacterium sp. H13-3
Agrobacterium tumefaciens str. C58
Agrobacterium vitis S4     (1 questionable structure)
Akkermansia muciniphila ATCC BAA-835     (2 CRISPRs)
Alcanivorax borkumensis SK2
Alicycliphilus denitrificans BC     (2 CRISPRs, 1 questionable structure)
Alicycliphilus denitrificans K601     (1 CRISPR)
Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446     (4 CRISPRs)
Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1     (3 CRISPRs)
Aliivibrio salmonicida LFI1238
Alkalilimnicola ehrlichei MLHE-1     (1 CRISPR, 3 questionable structures)
Alkaliphilus metalliredigens QYMF     (2 CRISPRs, 2 questionable structures)
Alkaliphilus oremlandii OhILAs     (1 questionable structure)
Allochromatium vinosum DSM 180     (3 CRISPRs, 2 questionable structures)
Alteromonas macleodii 'Deep ecotype'     (1 CRISPR, 2 questionable structures)
Alteromonas sp. SN2     (1 questionable structure)
Aminobacterium colombiense DSM 12261     (1 CRISPR)
Ammonifex degensii KC4     (8 CRISPRs, 2 questionable structures)
Amycolatopsis mediterranei S699     (4 CRISPRs, 8 questionable structures)
Amycolatopsis mediterranei U32     (4 CRISPRs, 8 questionable structures)
Amycolicicoccus subflavus DQS3-9A1
Anabaena variabilis ATCC 29413     (11 CRISPRs, 4 questionable structures)
Anaerocellum thermophilum DSM 6725     (9 CRISPRs)
Anaerococcus prevotii DSM 20548
Anaerolinea thermophila UNI-1     (5 CRISPRs, 2 questionable structures)
Anaeromyxobacter dehalogenans 2CP-1     (2 CRISPRs, 3 questionable structures)
Anaeromyxobacter dehalogenans 2CP-C     (5 questionable structures)
Anaeromyxobacter sp. Fw109-5     (1 questionable structure)
Anaeromyxobacter sp. K     (2 CRISPRs, 4 questionable structures)
Anaplasma centrale str. Israel     (1 questionable structure)
Anaplasma marginale str. Florida
Anaplasma marginale str. St. Maries
Anaplasma phagocytophilum HZ     (1 questionable structure)
Anoxybacillus flavithermus WK1     (3 CRISPRs)
Aquifex aeolicus VF5     (11 CRISPRs)
Arcanobacterium haemolyticum DSM 20595     (1 CRISPR, 1 questionable structure)
Arcobacter butzleri ED-1
Arcobacter butzleri RM4018
Arcobacter nitrofigilis DSM 7299     (1 CRISPR)
Arcobacter sp. L     (1 CRISPR)
Arthrobacter arilaitensis Re117
Arthrobacter aurescens TC1     (7 questionable structures)
Arthrobacter chlorophenolicus A6     (1 CRISPR, 1 questionable structure)
Arthrobacter phenanthrenivorans Sphe3     (1 questionable structure)
Arthrobacter sp. FB24     (2 questionable structures)
Aster yellows witches'-broom phytoplasma AYWB
Asticcacaulis excentricus CB 48
Atopobium parvulum DSM 20469
Azoarcus sp. BH72     (3 questionable structures)
Azoarcus sp. EbN1     (5 CRISPRs)
Azorhizobium caulinodans ORS 571
Azospirillum lipoferum 4B     (3 CRISPRs, 2 questionable structures)
Azospirillum sp. B510     (7 CRISPRs, 1 questionable structure)
Azotobacter vinelandii DJ     (2 CRISPRs, 1 questionable structure)
Bacillus amyloliquefaciens CAU-B946
Bacillus amyloliquefaciens DSM7
Bacillus amyloliquefaciens FZB42
Bacillus amyloliquefaciens LL3
Bacillus amyloliquefaciens TA208
Bacillus amyloliquefaciens XH7
Bacillus anthracis str. 'Ames Ancestor'     (2 questionable structures)
Bacillus anthracis str. A0248     (1 CRISPR, 2 questionable structures)
Bacillus anthracis str. Ames     (2 questionable structures)
Bacillus anthracis str. CDC 684     (1 questionable structure)
Bacillus anthracis str. Sterne     (2 questionable structures)
Bacillus atrophaeus 1942
Bacillus cellulosilyticus DSM 2522     (5 questionable structures)
Bacillus cereus 03BB102     (1 questionable structure)
Bacillus cereus AH187
Bacillus cereus AH820     (1 questionable structure)
Bacillus cereus ATCC 10987     (1 questionable structure)
Bacillus cereus ATCC 14579     (1 questionable structure)
Bacillus cereus B4264     (1 questionable structure)
Bacillus cereus biovar anthracis str. CI     (1 questionable structure)
Bacillus cereus E33L     (1 questionable structure)
Bacillus cereus F837/76     (1 CRISPR, 3 questionable structures)
Bacillus cereus G9842     (2 questionable structures)
Bacillus cereus NC7401     (1 questionable structure)
Bacillus cereus Q1
Bacillus cereus subsp. cytotoxis NVH 391-98     (2 CRISPRs, 1 questionable structure)
Bacillus clausii KSM-K16     (8 CRISPRs, 1 questionable structure)
Bacillus coagulans 2-6     (2 CRISPRs, 1 questionable structure)
Bacillus coagulans 36D1     (4 CRISPRs, 7 questionable structures)
Bacillus halodurans C-125     (5 CRISPRs)
Bacillus licheniformis ATCC 14580
Bacillus megaterium DSM319     (2 questionable structures)
Bacillus megaterium QM B1551     (2 questionable structures)
Bacillus megaterium WSH-002     (2 questionable structures)
Bacillus pseudofirmus OF4     (2 questionable structures)
Bacillus pumilus SAFR-032
Bacillus selenitireducens MLS10
Bacillus subtilis BSn5
Bacillus subtilis subsp. spizizenii str. W23
Bacillus subtilis subsp. spizizenii TU-B-10
Bacillus subtilis subsp. subtilis RO-NN-1
Bacillus subtilis subsp. subtilis str. 168
Bacillus thuringiensis BMB171     (1 questionable structure)
Bacillus thuringiensis serovar chinensis CT-43     (2 CRISPRs, 1 questionable structure)
Bacillus thuringiensis serovar finitimus YBT-020     (1 questionable structure)
Bacillus thuringiensis serovar konkukian str. 97-27     (1 questionable structure)
Bacillus thuringiensis str. Al Hakam     (1 CRISPR, 4 questionable structures)
Bacillus tusciae DSM 2912     (4 CRISPRs, 1 questionable structure)
Bacillus weihenstephanensis KBAB4     (2 questionable structures)
Bacteriovorax marinus SJ
Bacteroides fragilis 638R     (1 CRISPR)
Bacteroides fragilis NCTC 9343     (2 CRISPRs, 2 questionable structures)
Bacteroides fragilis YCH46     (1 CRISPR)
Bacteroides helcogenes P 36-108     (1 CRISPR)
Bacteroides salanitronis DSM 18170     (2 questionable structures)
Bacteroides thetaiotaomicron VPI-5482     (1 questionable structure)
Bacteroides vulgatus ATCC 8482
Bartonella bacilliformis KC583
Bartonella clarridgeiae 73     (1 questionable structure)
Bartonella grahamii as4aup     (1 questionable structure)
Bartonella henselae str. Houston-1
Bartonella quintana str. Toulouse
Bartonella tribocorum CIP 105476     (1 questionable structure)
Baumannia cicadellinicola str. Hc (Homalodisca coagulata)
Bdellovibrio bacteriovorus HD100
Beijerinckia indica subsp. indica ATCC 9039
Beutenbergia cavernae DSM 12333
Bifidobacterium adolescentis ATCC 15703     (2 CRISPRs, 3 questionable structures)
Bifidobacterium animalis subsp. lactis AD011     (1 CRISPR, 3 questionable structures)
Bifidobacterium animalis subsp. lactis BB-12     (1 CRISPR, 1 questionable structure)
Bifidobacterium animalis subsp. lactis Bl-04     (1 CRISPR, 1 questionable structure)
Bifidobacterium animalis subsp. lactis BLC1     (1 CRISPR, 1 questionable structure)
Bifidobacterium animalis subsp. lactis CNCM I-2494     (1 CRISPR, 1 questionable structure)
Bifidobacterium animalis subsp. lactis DSM 10140     (1 CRISPR, 2 questionable structures)
Bifidobacterium animalis subsp. lactis V9     (1 CRISPR, 1 questionable structure)
Bifidobacterium bifidum PRL2010     (2 questionable structures)
Bifidobacterium bifidum S17     (1 CRISPR, 2 questionable structures)
Bifidobacterium breve ACS-071-V-Sch8b     (3 CRISPRs, 4 questionable structures)
Bifidobacterium dentium Bd1     (2 CRISPRs, 7 questionable structures)
Bifidobacterium longum DJO10A     (1 CRISPR, 1 questionable structure)
Bifidobacterium longum NCC2705     (1 questionable structure)
Bifidobacterium longum subsp. infantis 157F     (2 questionable structures)
Bifidobacterium longum subsp. infantis ATCC 15697     (2 questionable structures)
Bifidobacterium longum subsp. longum BBMN68     (4 CRISPRs, 1 questionable structure)
Bifidobacterium longum subsp. longum JCM 1217     (1 questionable structure)
Bifidobacterium longum subsp. longum JDM301     (2 questionable structures)
Bifidobacterium longum subsp. longum KACC 91563     (1 CRISPR, 2 questionable structures)
Blastococcus saxobsidens DD2     (1 CRISPR)
Blattabacterium sp. (Blattella germanica) str. Bge
Blattabacterium sp. (Cryptocercus punctulatus) str. Cpu
Blattabacterium sp. (Mastotermes darwiniensis) str. MADAR
Blattabacterium sp. (Periplaneta americana) str. BPLAN
Bordetella avium 197N
Bordetella bronchiseptica RB50     (2 questionable structures)
Bordetella parapertussis 12822     (2 questionable structures)
Bordetella pertussis CS     (1 questionable structure)
Bordetella pertussis Tohama I     (1 questionable structure)
Bordetella petrii DSM 12804
Borrelia afzelii PKo
Borrelia bissettii DN127
Borrelia burgdorferi B31
Borrelia burgdorferi ZS7
Borrelia duttonii Ly
Borrelia garinii PBi
Borrelia hermsii DAH
Borrelia recurrentis A1
Borrelia turicatae 91E135
Brachybacterium faecium DSM 4810     (1 questionable structure)
Brachyspira hyodysenteriae WA1     (2 questionable structures)
Brachyspira intermedia PWS/A     (6 questionable structures)
Brachyspira murdochii DSM 12563     (1 CRISPR, 2 questionable structures)
Brachyspira pilosicoli 95/1000
Bradyrhizobium japonicum USDA 110
Bradyrhizobium japonicum USDA 6
Bradyrhizobium sp. BTAi1     (1 questionable structure)
Bradyrhizobium sp. ORS278     (1 questionable structure)
Bradyrhizobium sp. S23321     (1 questionable structure)
Brevibacillus brevis NBRC 100599
Brevundimonas subvibrioides ATCC 15264
Brucella abortus A13334
Brucella abortus biovar 1 str. 9-941
Brucella abortus S19
Brucella canis ATCC 23365
Brucella canis HSK A52141
Brucella melitensis 16M     (1 questionable structure)
Brucella melitensis ATCC 23457     (1 questionable structure)
Brucella melitensis biovar Abortus 2308
Brucella melitensis M5-90     (1 questionable structure)
Brucella microti CCM 4915     (1 questionable structure)
Brucella ovis ATCC 25840
Brucella pinnipedialis B2/94     (1 questionable structure)
Brucella suis 1330
Brucella suis ATCC 23445
Brucella suis VBI22
Buchnera aphidicola (Cinara cedri)
Buchnera aphidicola (Cinara tujafilina)
Buchnera aphidicola str. 5A (Acyrthosiphon pisum)
Buchnera aphidicola str. Ak (Acyrthosiphon kondoi)
Buchnera aphidicola str. APS (Acyrthosiphon pisum)
Buchnera aphidicola str. Bp (Baizongia pistaciae)
Buchnera aphidicola str. Cc (Cinara cedri)
Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)
Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)     (1 questionable structure)
Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)
Buchnera aphidicola str. Sg (Schizaphis graminum)
Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)
Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)
Buchnera aphidicola str. Ua (Uroleucon ambrosiae)
Burkholderia ambifaria MC40-6     (3 questionable structures)
Burkholderia cenocepacia AU 1054
Burkholderia cenocepacia HI2424
Burkholderia cenocepacia J2315
Burkholderia cenocepacia MC0-3
Burkholderia cepacia AMMD     (1 CRISPR, 2 questionable structures)
Burkholderia gladioli BSR3
Burkholderia glumae BGR1     (1 questionable structure)
Burkholderia mallei ATCC 23344
Burkholderia mallei NCTC 10229
Burkholderia mallei NCTC 10247
Burkholderia mallei SAVP1
Burkholderia multivorans ATCC 17616
Burkholderia phymatum STM815
Burkholderia phytofirmans PsJN     (1 questionable structure)
Burkholderia pseudomallei 1106a     (1 questionable structure)
Burkholderia pseudomallei 1710b     (1 questionable structure)
Burkholderia pseudomallei 668
Burkholderia pseudomallei K96243     (3 questionable structures)
Burkholderia pseudomallei MSHR346
Burkholderia rhizoxinica HKI 454
Burkholderia sp. 383     (2 questionable structures)
Burkholderia sp. CCGE1001
Burkholderia sp. CCGE1002
Burkholderia sp. CCGE1003     (2 questionable structures)
Burkholderia sp. YI23     (4 CRISPRs, 3 questionable structures)
Burkholderia thailandensis E264
Burkholderia vietnamiensis G4
Burkholderia xenovorans LB400     (4 questionable structures)
Butyrivibrio proteoclasticus B316
Caldicellulosiruptor hydrothermalis 108     (6 CRISPRs)
Caldicellulosiruptor kristjanssonii 177R1B     (14 CRISPRs)
Caldicellulosiruptor kronotskyensis 2002     (8 CRISPRs)
Caldicellulosiruptor lactoaceticus 6A     (12 CRISPRs)
Caldicellulosiruptor obsidiansis OB47     (10 CRISPRs)
Caldicellulosiruptor owensensis OL     (3 CRISPRs)
Caldicellulosiruptor saccharolyticus DSM 8903     (13 CRISPRs)
Caldilinea aerophila DSM 14535 = NBRC 104270     (4 CRISPRs, 6 questionable structures)
Caldisericum exile AZM16c01     (1 CRISPR)
Calditerrivibrio nitroreducens DSM 19672     (4 CRISPRs)
Campylobacter concisus 13826     (1 questionable structure)
Campylobacter curvus 525.92     (2 CRISPRs, 1 questionable structure)
Campylobacter fetus subsp. fetus 82-40     (2 CRISPRs)
Campylobacter hominis ATCC BAA-381     (1 CRISPR)
Campylobacter jejuni RM1221     (1 CRISPR, 1 questionable structure)
Campylobacter jejuni subsp. doylei 269.97     (1 CRISPR, 1 questionable structure)
Campylobacter jejuni subsp. jejuni 81-176
Campylobacter jejuni subsp. jejuni 81116     (1 CRISPR, 1 questionable structure)
Campylobacter jejuni subsp. jejuni ICDCCJ07001     (1 CRISPR, 2 questionable structures)
Campylobacter jejuni subsp. jejuni NCTC 11168     (1 CRISPR, 1 questionable structure)
Campylobacter lari RM2100
Candidatus Accumulibacter phosphatis clade IIA str. UW-1     (2 CRISPRs)
Candidatus Amoebophilus asiaticus 5a2     (4 questionable structures)
Candidatus Arthromitus sp. SFB-mouse-Japan     (3 CRISPRs)
Candidatus Arthromitus sp. SFB-rat-Yit     (1 CRISPR)
Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2
Candidatus Blochmannia floridanus
Candidatus Blochmannia pennsylvanicus str. BPEN
Candidatus Blochmannia vafer str. BVAF
Candidatus Carsonella ruddii PV
Candidatus Chloracidobacterium thermophilum B     (3 CRISPRs, 1 questionable structure)
Candidatus Desulfococcus oleovorans Hxd3     (2 CRISPRs, 4 questionable structures)
Candidatus Desulforudis audaxviator MP104C     (4 CRISPRs, 2 questionable structures)
Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)     (1 questionable structure)
Candidatus Hodgkinia cicadicola Dsem
Candidatus Liberibacter asiaticus str. psy62
Candidatus Liberibacter solanacearum CLso-ZC1     (1 questionable structure)
Candidatus Midichloria mitochondrii IricVA
Candidatus Moranella endobia PCIT
Candidatus Nitrospira defluvii     (1 CRISPR)
Candidatus Pelagibacter sp. IMCC9063
Candidatus Pelagibacter ubique HTCC1062
Candidatus Phytoplasma australiense     (1 questionable structure)
Candidatus Phytoplasma mali
Candidatus Protochlamydia amoebophila UWE25     (1 questionable structure)
Candidatus Puniceispirillum marinum IMCC1322     (2 CRISPRs)
Candidatus Riesia pediculicola USDA
Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)
Candidatus Sulcia muelleri CARI
Candidatus Sulcia muelleri DMIN
Candidatus Sulcia muelleri GWSS     (1 questionable structure)
Candidatus Sulcia muelleri SMDSEM
Candidatus Tremblaya princeps PCIT
Candidatus Vesicomyosocius okutanii HA
Candidatus Zinderia insecticola CARI
Capnocytophaga canimorsus Cc5     (2 CRISPRs)
Capnocytophaga ochracea DSM 7271     (1 CRISPR, 5 questionable structures)
Carboxydothermus hydrogenoformans Z-2901     (2 CRISPRs, 1 questionable structure)
Carnobacterium sp. 17-4
Catenulispora acidiphila DSM 44928     (6 CRISPRs, 4 questionable structures)
Caulobacter crescentus CB15     (1 questionable structure)
Caulobacter crescentus NA1000
Caulobacter segnis ATCC 21756     (1 questionable structure)
Caulobacter sp. K31     (1 questionable structure)
Cellulomonas fimi ATCC 484     (1 CRISPR, 1 questionable structure)
Cellulomonas flavigena DSM 20109     (2 questionable structures)
Cellulophaga algicola DSM 14237     (1 questionable structure)
Cellulophaga lytica DSM 7489     (2 questionable structures)
Cellvibrio gilvus ATCC 13127     (1 questionable structure)
Cellvibrio japonicus Ueda107     (1 CRISPR, 1 questionable structure)
Chitinophaga pinensis DSM 2588     (2 questionable structures)
Chlamydia muridarum Nigg
Chlamydia trachomatis
Chlamydia trachomatis 434/Bu
Chlamydia trachomatis A/HAR-13
Chlamydia trachomatis A2497
Chlamydia trachomatis B/Jali20/OT
Chlamydia trachomatis B/TZ1A828/OT
Chlamydia trachomatis D/UW-3/CX
Chlamydia trachomatis L2b/UCH-1/proctitis
Chlamydia trachomatis L2c
Chlamydophila abortus S26/3
Chlamydophila caviae GPIC
Chlamydophila felis Fe/C-56
Chlamydophila pecorum E58
Chlamydophila pneumoniae AR39
Chlamydophila pneumoniae CWL029
Chlamydophila pneumoniae J138
Chlamydophila pneumoniae TW-183
Chlamydophila psittaci 6BC
Chlorobaculum parvum NCIB 8327     (1 CRISPR, 2 questionable structures)
Chlorobium chlorochromatii CaD3     (2 CRISPRs)
Chlorobium limicola DSM 245     (4 CRISPRs, 3 questionable structures)
Chlorobium phaeobacteroides BS1     (4 CRISPRs, 2 questionable structures)
Chlorobium phaeobacteroides DSM 266     (5 CRISPRs, 1 questionable structure)
Chlorobium tepidum TLS     (2 CRISPRs, 2 questionable structures)
Chloroflexus aggregans DSM 9485     (3 CRISPRs, 21 questionable structures)
Chloroflexus aurantiacus J-10-fl     (3 CRISPRs, 5 questionable structures)
Chloroflexus sp. Y-400-fl     (4 CRISPRs, 5 questionable structures)
Chloroherpeton thalassium ATCC 35110     (2 CRISPRs, 3 questionable structures)
Chromobacterium violaceum ATCC 12472     (4 CRISPRs)
Chromohalobacter salexigens DSM 3043     (2 CRISPRs)
Citrobacter koseri ATCC BAA-895     (1 CRISPR, 5 questionable structures)
Citrobacter rodentium ICC168     (2 CRISPRs, 16 questionable structures)
Clavibacter michiganensis subsp. michiganensis NCPPB 382     (1 questionable structure)
Clavibacter michiganensis subsp. sepedonicus
Clostridiales genomosp. BVAB3 str. UPII9-5     (1 questionable structure)
Clostridium acetobutylicum ATCC 824     (2 questionable structures)
Clostridium acetobutylicum DSM 1731     (2 questionable structures)
Clostridium beijerinckii NCIMB 8052     (2 questionable structures)
Clostridium botulinum A str. ATCC 19397 "Hall"     (8 CRISPRs, 2 questionable structures)
Clostridium botulinum A str. ATCC 3502     (8 CRISPRs)
Clostridium botulinum A str. Hall     (8 CRISPRs, 2 questionable structures)
Clostridium botulinum A2 str. Kyoto     (6 CRISPRs)
Clostridium botulinum A3 str. Loch Maree     (5 CRISPRs, 2 questionable structures)
Clostridium botulinum B str. Eklund 17B     (1 CRISPR)
Clostridium botulinum B1 str. Okra     (9 CRISPRs)
Clostridium botulinum Ba4 str. 657     (7 CRISPRs)
Clostridium botulinum BKT015925     (6 CRISPRs)
Clostridium botulinum E3 str. Alaska E43     (3 CRISPRs, 1 questionable structure)
Clostridium botulinum F str. Langeland     (12 CRISPRs, 1 questionable structure)
Clostridium cellulolyticum H10     (3 CRISPRs)
Clostridium cellulovorans 743B     (1 CRISPR, 1 questionable structure)
Clostridium clariflavum DSM 19732     (3 CRISPRs)
Clostridium difficile 2007855     (18 CRISPRs, 1 questionable structure)
Clostridium difficile 630     (12 CRISPRs, 3 questionable structures)
Clostridium difficile BI1     (34 CRISPRs, 1 questionable structure)
Clostridium difficile CD196     (13 CRISPRs, 5 questionable structures)
Clostridium difficile CF5     (15 CRISPRs, 1 questionable structure)
Clostridium difficile M120     (6 CRISPRs, 2 questionable structures)
Clostridium difficile R20291     (13 CRISPRs, 5 questionable structures)
Clostridium kluyveri DSM 555     (5 CRISPRs)
Clostridium kluyveri NBRC 12016     (5 CRISPRs)
Clostridium lentocellum DSM 5427
Clostridium ljungdahlii
Clostridium novyi NT     (2 CRISPRs, 2 questionable structures)
Clostridium perfringens ATCC 13124     (2 CRISPRs)
Clostridium perfringens SM101     (2 CRISPRs)
Clostridium perfringens str. 13     (2 questionable structures)
Clostridium phage phiSM101
Clostridium phytofermentans ISDg     (3 questionable structures)
Clostridium saccharolyticum WM1     (1 CRISPR, 7 questionable structures)
Clostridium sp. BNL1100     (1 CRISPR, 1 questionable structure)
Clostridium sp. SY8519     (3 CRISPRs, 2 questionable structures)
Clostridium sticklandii DSM 519     (1 questionable structure)
Clostridium tetani E88     (8 CRISPRs)
Clostridium thermocellum ATCC 27405     (5 CRISPRs)
Collimonas fungivorans Ter331
Colwellia psychrerythraea 34H     (1 questionable structure)
Comamonas sp. CNB-1
Comamonas testosteroni CNB-2     (2 questionable structures)
Conexibacter woesei DSM 14684     (3 questionable structures)
Coprothermobacter proteolyticus DSM 5265     (1 CRISPR, 2 questionable structures)
Coraliomargarita akajimensis DSM 45221     (4 questionable structures)
Corallococcus coralloides DSM 2259     (7 CRISPRs, 9 questionable structures)
Coriobacterium glomerans PW2     (2 CRISPRs)
Corynebacterium aurimucosum
Corynebacterium aurimucosum ATCC 700975     (1 CRISPR)
Corynebacterium diphtheriae 241     (2 CRISPRs, 1 questionable structure)
Corynebacterium diphtheriae 31A     (1 CRISPR, 1 questionable structure)
Corynebacterium diphtheriae BH8     (1 CRISPR, 1 questionable structure)
Corynebacterium diphtheriae C7 (beta)     (1 CRISPR, 1 questionable structure)
Corynebacterium diphtheriae CDCE 8392     (1 CRISPR, 1 questionable structure)
Corynebacterium diphtheriae HC01     (2 CRISPRs, 1 questionable structure)
Corynebacterium diphtheriae HC02     (1 CRISPR)
Corynebacterium diphtheriae HC03     (1 CRISPR, 1 questionable structure)
Corynebacterium diphtheriae HC04     (1 CRISPR, 1 questionable structure)
Corynebacterium diphtheriae INCA 402     (1 CRISPR)
Corynebacterium diphtheriae NCTC 13129     (2 CRISPRs)
Corynebacterium diphtheriae PW8     (1 CRISPR)
Corynebacterium diphtheriae VA01     (1 CRISPR, 2 questionable structures)
Corynebacterium efficiens YS-314     (1 CRISPR, 1 questionable structure)
Corynebacterium glutamicum ATCC 13032     (2 questionable structures)
Corynebacterium glutamicum R     (1 CRISPR)
Corynebacterium jeikeium K411     (1 CRISPR, 1 questionable structure)
Corynebacterium kroppenstedtii DSM 44385
Corynebacterium pseudotuberculosis 3/99-5     (1 CRISPR)
Corynebacterium pseudotuberculosis 316
Corynebacterium pseudotuberculosis FRC41     (1 CRISPR)
Corynebacterium pseudotuberculosis P54B96     (1 CRISPR)
Corynebacterium resistens DSM 45100     (2 CRISPRs, 3 questionable structures)
Corynebacterium ulcerans BR-AD22     (3 CRISPRs)
Corynebacterium urealyticum DSM 7109     (2 CRISPRs, 1 questionable structure)
Corynebacterium variabile DSM 44702
Coxiella burnetii CbuG_Q212
Coxiella burnetii CbuK_Q154     (1 questionable structure)
Coxiella burnetii Dugway 5J108-111
Coxiella burnetii RSA 331     (1 questionable structure)
Coxiella burnetii RSA 493
Croceibacter atlanticus HTCC2559     (1 questionable structure)
Cronobacter turicensis     (2 CRISPRs, 6 questionable structures)
Cryptobacterium curtum DSM 15641     (1 questionable structure)
Cupriavidus necator N-1
Cupriavidus taiwanensis     (1 questionable structure)
cyanobacterium UCYN-A
Cyanothece sp. ATCC 51142     (5 CRISPRs, 2 questionable structures)
Cyanothece sp. PCC 7424     (14 CRISPRs, 9 questionable structures)
Cyanothece sp. PCC 7425     (5 CRISPRs)
Cyanothece sp. PCC 7822     (8 CRISPRs, 4 questionable structures)
Cyanothece sp. PCC 8801     (6 CRISPRs, 5 questionable structures)
Cyanothece sp. PCC 8802     (8 CRISPRs, 4 questionable structures)
Cyclobacterium marinum DSM 745
Cytophaga hutchinsonii ATCC 33406
Dechloromonas aromatica RCB
Deferribacter desulfuricans SSM1     (4 CRISPRs)
Dehalococcoides ethenogenes 195
Dehalococcoides sp. BAV1     (1 CRISPR)
Dehalococcoides sp. CBDB1     (1 CRISPR)
Dehalococcoides sp. GT     (1 CRISPR)
Dehalococcoides sp. VS
Dehalogenimonas lykanthroporepellens BL-DC-9     (2 questionable structures)
Deinococcus deserti VCD115
Deinococcus geothermalis DSM 11300     (6 CRISPRs)
Deinococcus maricopensis DSM 21211     (2 questionable structures)
Deinococcus proteolyticus MRP     (4 CRISPRs, 2 questionable structures)
Deinococcus radiodurans R1     (1 questionable structure)
Delftia acidovorans SPH-1     (1 CRISPR)
Delftia sp. Cs1-4     (2 CRISPRs)
Denitrovibrio acetiphilus DSM 12809     (1 questionable structure)
Desulfarculus baarsii DSM 2075     (3 CRISPRs, 3 questionable structures)
Desulfatibacillum alkenivorans AK-01     (1 CRISPR)
Desulfitobacterium hafniense DCB-2     (5 CRISPRs, 1 questionable structure)
Desulfitobacterium hafniense Y51     (6 CRISPRs, 1 questionable structure)
Desulfobacca acetoxidans DSM 11109     (7 CRISPRs, 3 questionable structures)
Desulfobacterium autotrophicum HRM2     (1 CRISPR, 1 questionable structure)
Desulfobulbus propionicus DSM 2032     (1 CRISPR)
Desulfohalobium retbaense DSM 5692     (1 CRISPR)
Desulfomicrobium baculatum DSM 4028     (2 questionable structures)
Desulfosporosinus orientis DSM 765     (2 CRISPRs)
Desulfotalea psychrophila LSv54     (1 CRISPR, 3 questionable structures)
Desulfotomaculum acetoxidans DSM 771     (11 CRISPRs, 1 questionable structure)
Desulfotomaculum carboxydivorans CO-1-SRB     (4 CRISPRs)
Desulfotomaculum kuznetsovii DSM 6115     (10 CRISPRs, 1 questionable structure)
Desulfotomaculum reducens MI-1     (5 CRISPRs)
Desulfotomaculum ruminis DSM 2154     (10 CRISPRs, 1 questionable structure)
Desulfovibrio aespoeensis Aspo-2
Desulfovibrio africanus str. Walvis Bay
Desulfovibrio desulfuricans G20     (1 CRISPR)
Desulfovibrio desulfuricans ND132     (1 CRISPR, 1 questionable structure)
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774     (2 CRISPRs)
Desulfovibrio magneticus RS-1     (2 CRISPRs)
Desulfovibrio salexigens DSM 2638
Desulfovibrio vulgaris str. 'Miyazaki F'     (1 CRISPR, 1 questionable structure)
Desulfovibrio vulgaris subsp. vulgaris DP4     (1 CRISPR, 1 questionable structure)
Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough     (1 CRISPR, 1 questionable structure)
Desulfurispirillum indicum S5     (2 CRISPRs)
Desulfurivibrio alkaliphilus AHT2     (2 CRISPRs)
Desulfurobacterium thermolithotrophum DSM 11699     (1 CRISPR)
Diaphorobacter sp. TPSY     (1 CRISPR)
Dichelobacter nodosus VCS1703A     (1 CRISPR, 1 questionable structure)
Dickeya dadantii 3937     (4 CRISPRs)
Dickeya dadantii Ech586
Dickeya dadantii Ech703     (4 CRISPRs)
Dickeya zeae Ech1591     (4 CRISPRs, 2 questionable structures)
Dictyoglomus thermophilum H-6-12     (3 CRISPRs)
Dictyoglomus turgidum DSM 6724     (2 CRISPRs, 1 questionable structure)
Dinoroseobacter shibae DFL 12     (2 CRISPRs, 1 questionable structure)
Dyadobacter fermentans DSM 18053     (4 questionable structures)
Edwardsiella ictaluri 93-146
Edwardsiella tarda EIB202     (1 questionable structure)
Eggerthella lenta DSM 2243     (2 CRISPRs)
Eggerthella sp. YY7918     (4 CRISPRs, 2 questionable structures)
Ehrlichia canis str. Jake
Ehrlichia chaffeensis str. Arkansas
Ehrlichia ruminantium str. Gardel
Ehrlichia ruminantium str. Welgevonden
Elusimicrobium minutum Pei191     (1 CRISPR)
Enterobacter aerogenes KCTC 2190     (1 questionable structure)
Enterobacter asburiae LF7a     (1 questionable structure)
Enterobacter cloacae EcWSU1
Enterobacter cloacae SCF1     (2 questionable structures)
Enterobacter cloacae subsp. cloacae ATCC 13047     (2 questionable structures)
Enterobacter sakazakii ATCC BAA-894     (3 CRISPRs, 6 questionable structures)
Enterobacter sp. 638     (2 CRISPRs, 6 questionable structures)
Enterococcus faecalis V583     (2 questionable structures)
Enterococcus faecium Aus0004
Erwinia amylovora     (3 CRISPRs, 1 questionable structure)
Erwinia amylovora ATCC 49946     (3 CRISPRs, 1 questionable structure)
Erwinia amylovora CFBP1430
Erwinia billingiae Eb661     (3 questionable structures)
Erwinia carotovora subsp. atroseptica SCRI1043     (3 CRISPRs, 1 questionable structure)
Erwinia pyrifoliae Ep1/96     (5 CRISPRs, 3 questionable structures)
Erwinia tasmaniensis Et1/99     (2 CRISPRs)
Erysipelothrix rhusiopathiae str. Fujisawa
Erythrobacter litoralis HTCC2594     (1 questionable structure)
Escherichia coli 536     (1 CRISPR, 5 questionable structures)
Escherichia coli 55989     (2 CRISPRs)
Escherichia coli APEC O1     (2 CRISPRs, 3 questionable structures)
Escherichia coli B str. REL606     (2 CRISPRs, 3 questionable structures)
Escherichia coli BL21(DE3)     (2 CRISPRs, 2 questionable structures)
Escherichia coli BW2952     (2 CRISPRs, 2 questionable structures)
Escherichia coli C str. ATCC 8739     (4 CRISPRs, 2 questionable structures)
Escherichia coli CFT073     (2 questionable structures)
Escherichia coli E24377A     (3 CRISPRs)
Escherichia coli ED1a     (2 CRISPRs, 3 questionable structures)
Escherichia coli HS     (3 CRISPRs, 2 questionable structures)
Escherichia coli IAI1     (3 CRISPRs, 1 questionable structure)
Escherichia coli IAI39     (1 CRISPR)
Escherichia coli KO11FL     (2 CRISPRs, 4 questionable structures)
Escherichia coli LF82     (2 CRISPRs, 2 questionable structures)
Escherichia coli O103:H2 str. 12009     (2 CRISPRs, 2 questionable structures)
Escherichia coli O111:H- str. 11128     (2 CRISPRs, 1 questionable structure)
Escherichia coli O127:H6 str. E2348/69     (2 questionable structures)
Escherichia coli O157:H7     (2 CRISPRs)
Escherichia coli O157:H7 str. EC4115     (2 CRISPRs)
Escherichia coli O157:H7 str. Sakai     (2 CRISPRs)
Escherichia coli O157:H7 str. TW14359     (2 CRISPRs)
Escherichia coli O26:H11 str. 11368     (2 CRISPRs, 1 questionable structure)
Escherichia coli O55:H7 str. CB9615     (2 CRISPRs)
Escherichia coli S88     (2 CRISPRs, 2 questionable structures)
Escherichia coli SE11     (2 CRISPRs, 1 questionable structure)
Escherichia coli SECEC SMS-3-5     (1 CRISPR)
Escherichia coli str. K-12 substr. DH10B     (2 CRISPRs, 2 questionable structures)
Escherichia coli str. K-12 substr. MG1655     (2 CRISPRs, 2 questionable structures)
Escherichia coli str. K-12 substr. W3110
Escherichia coli UMN026     (3 CRISPRs, 5 questionable structures)
Escherichia coli UTI89     (2 CRISPRs, 3 questionable structures)
Escherichia fergusonii ATCC 35469     (3 CRISPRs, 1 questionable structure)
Ethanoligenens harbinense YUAN-3     (1 CRISPR)
Eubacterium eligens ATCC 27750     (1 CRISPR, 1 questionable structure)
Eubacterium limosum KIST612     (2 CRISPRs)
Eubacterium rectale ATCC 33656     (2 CRISPRs)
Exiguobacterium sibiricum 255-15     (1 CRISPR)
Exiguobacterium sp. AT1b
Ferrimonas balearica DSM 9799     (1 questionable structure)
Fervidobacterium nodosum Rt17-B1     (2 CRISPRs)
Fervidobacterium pennivorans DSM 9078     (5 CRISPRs, 1 questionable structure)
Fibrobacter succinogenes subsp. succinogenes S85     (14 CRISPRs)
Filifactor alocis ATCC 35896     (2 CRISPRs)
Finegoldia magna ATCC 29328     (4 CRISPRs)
Flavobacteriaceae bacterium 3519-10     (1 questionable structure)
Flavobacteriales bacterium HTCC2170
Flavobacterium branchiophilum FL-15     (6 CRISPRs, 4 questionable structures)
Flavobacterium columnare ATCC 49512     (3 CRISPRs)
Flavobacterium indicum GPTSA100-9
Flavobacterium johnsoniae UW101
Flavobacterium psychrophilum JIP02/86     (1 CRISPR, 2 questionable structures)
Flexistipes sinusarabici DSM 4947     (7 CRISPRs)
Fluviicola taffensis DSM 16823     (1 CRISPR)
Francisella philomiragia subsp. philomiragia ATCC 25017     (1 CRISPR)
Francisella sp. TX077308
Francisella tularensis subsp. holarctica
Francisella tularensis subsp. holarctica FTA
Francisella tularensis subsp. holarctica OSU18
Francisella tularensis subsp. mediasiatica FSC147
Francisella tularensis subsp. novicida U112     (2 CRISPRs, 2 questionable structures)
Francisella tularensis subsp. tularensis FSC 198
Francisella tularensis subsp. tularensis SCHU S4
Francisella tularensis subsp. tularensis WY96-3418
Francisella tularensis TI0902
Francisella tularensis TIGB03
Frankia alni ACN14a     (7 CRISPRs, 4 questionable structures)
Frankia sp. CcI3     (4 CRISPRs, 3 questionable structures)
Frankia sp. EAN1pec     (5 CRISPRs, 1 questionable structure)
Frankia sp. EuI1c     (7 questionable structures)
Frankia symbiont of Datisca glomerata     (1 CRISPR, 7 questionable structures)
Frateuria aurantia DSM 6220
Fusobacterium nucleatum subsp. nucleatum ATCC 25586     (1 CRISPR)
Gallibacterium anatis UMN179     (2 CRISPRs)
Gallionella capsiferriformans ES-2     (1 questionable structure)
gamma proteobacterium HdN1     (2 CRISPRs, 2 questionable structures)
Gardnerella vaginalis 409-05     (1 CRISPR, 3 questionable structures)
Gardnerella vaginalis ATCC 14019     (1 CRISPR, 1 questionable structure)
Gemmatimonas aurantiaca T-27
Geobacillus kaustophilus HTA426     (4 CRISPRs, 1 questionable structure)
Geobacillus sp. C56-T3     (4 CRISPRs, 3 questionable structures)
Geobacillus sp. WCH70     (6 CRISPRs)
Geobacillus sp. Y4.1MC1     (5 CRISPRs, 4 questionable structures)
Geobacillus sp. Y412MC10     (1 questionable structure)
Geobacillus sp. Y412MC52     (6 CRISPRs, 2 questionable structures)
Geobacillus sp. Y412MC61     (6 CRISPRs, 3 questionable structures)
Geobacillus thermodenitrificans NG80-2     (3 CRISPRs, 1 questionable structure)
Geobacillus thermoglucosidasius C56-YS93     (6 CRISPRs, 2 questionable structures)
Geobacillus thermoleovorans CCB_US3_UF5     (2 CRISPRs, 2 questionable structures)
Geobacter bemidjiensis Bem     (6 questionable structures)
Geobacter lovleyi SZ     (1 CRISPR)
Geobacter metallireducens GS-15     (1 CRISPR, 1 questionable structure)
Geobacter sp. FRC-32     (1 CRISPR)
Geobacter sp. M18     (4 questionable structures)
Geobacter sp. M21     (4 questionable structures)
Geobacter sulfurreducens PCA     (2 CRISPRs)
Geobacter uraniumreducens Rf4     (2 CRISPRs, 3 questionable structures)
Geodermatophilus obscurus DSM 43160     (2 questionable structures)
Glaciecola nitratireducens FR1064
Glaciecola sp. 4H-3-7+YE-5     (1 CRISPR)
Glaciecola sp. 4H-3-7+YE-5     (2 questionable structures)
Gloeobacter violaceus PCC 7421     (1 questionable structure)
Gluconacetobacter diazotrophicus PAl 5     (7 CRISPRs)
Gluconacetobacter xylinus NBRC 3288     (3 CRISPRs)
Gluconobacter oxydans 621H
Gordonia bronchialis DSM 43247     (3 questionable structures)
Gordonia polyisoprenivorans VH2     (1 CRISPR, 3 questionable structures)
Gramella forsetii KT0803
Granulibacter bethesdensis CGDNIH1     (4 CRISPRs)
Granulicella mallensis MP5ACTX8
Haemophilus ducreyi 35000HP
Haemophilus influenzae 10810     (1 questionable structure)
Haemophilus influenzae 86-028NP     (1 questionable structure)
Haemophilus influenzae F3031     (1 questionable structure)
Haemophilus influenzae F3047
Haemophilus influenzae PittEE     (1 questionable structure)
Haemophilus influenzae PittGG
Haemophilus influenzae Rd KW20     (1 questionable structure)
Haemophilus parainfluenzae T3T1     (1 CRISPR)
Haemophilus parasuis SH0165     (2 questionable structures)
Haemophilus somnus 129PT
Haemophilus somnus 2336
Hahella chejuensis KCTC 2396     (2 CRISPRs, 1 questionable structure)
Halanaerobium sp. 'sapolanicus'     (1 CRISPR, 2 questionable structures)
Haliangium ochraceum DSM 14365     (3 CRISPRs, 14 questionable structures)
Haliscomenobacter hydrossis DSM 1100     (9 CRISPRs, 6 questionable structures)
Halomonas elongata DSM 2581     (1 CRISPR, 2 questionable structures)
Halorhodospira halophila SL1     (2 CRISPRs, 1 questionable structure)
Halothermothrix orenii H 168     (1 CRISPR)
Halothiobacillus neapolitanus c2     (1 CRISPR)
Helicobacter acinonychis str. Sheeba
Helicobacter bizzozeronii CIII-1
Helicobacter felis ATCC 49179     (1 questionable structure)
Helicobacter hepaticus ATCC 51449
Helicobacter mustelae 12198     (1 CRISPR, 3 questionable structures)
Helicobacter pylori
Helicobacter pylori 26695     (1 questionable structure)
Helicobacter pylori B38     (1 questionable structure)
Helicobacter pylori B8
Helicobacter pylori ELS37     (1 questionable structure)
Helicobacter pylori G27     (2 questionable structures)
Helicobacter pylori HPAG1     (1 questionable structure)
Helicobacter pylori J99
Helicobacter pylori P12
Helicobacter pylori PeCan4     (3 questionable structures)
Helicobacter pylori Shi470
Helicobacter pylori SJM180     (2 questionable structures)
Heliobacterium modesticaldum Ice1     (3 CRISPRs)
Herbaspirillum seropedicae SmR1     (2 questionable structures)
Herminiimonas arsenicoxydans
Herpetosiphon aurantiacus ATCC 23779     (13 CRISPRs, 8 questionable structures)
Hippea maritima DSM 10411
Hirschia baltica ATCC 49814     (1 questionable structure)
Hydrogenobacter thermophilus TK-6     (2 CRISPRs)
Hydrogenobaculum sp. Y04AAS1     (1 CRISPR, 1 questionable structure)
Hyphomicrobium denitrificans ATCC 51888     (3 questionable structures)
Hyphomicrobium sp. MC1     (1 questionable structure)
Hyphomonas neptunium ATCC 15444
Idiomarina loihiensis L2TR
Ilyobacter polytropus DSM 2926     (1 CRISPR, 1 questionable structure)
Intrasporangium calvum DSM 43043     (3 questionable structures)
Isoptericola variabilis 225     (3 questionable structures)
Isosphaera pallida ATCC 43644     (2 CRISPRs, 4 questionable structures)
Jannaschia sp. CCS1
Janthinobacterium sp. Marseille
Jonesia denitrificans DSM 20603     (2 questionable structures)
Kangiella koreensis DSM 16069
Ketogulonicigenium vulgare Y25     (1 CRISPR)
Kineococcus radiotolerans SRS30216
Kitasatospora setae KM-6054     (3 CRISPRs, 4 questionable structures)
Klebsiella oxytoca KCTC 1686     (2 CRISPRs)
Klebsiella pneumoniae 342     (1 CRISPR, 1 questionable structure)
Klebsiella pneumoniae NTUH-K2044     (2 CRISPRs, 2 questionable structures)
Klebsiella pneumoniae subsp. pneumoniae HS11286     (1 questionable structure)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Klebsiella variicola At-22     (2 CRISPRs, 1 questionable structure)
Kocuria rhizophila DC2201
Kosmotoga olearia TBF 19.5.1     (5 CRISPRs, 1 questionable structure)
Kribbella flavida DSM 17836     (8 questionable structures)
Krokinobacter sp. 4H-3-7-5
Kytococcus sedentarius DSM 20547     (1 questionable structure)
Lacinutrix sp. 5H-3-7-4
Lactobacillus acidophilus 30SC     (1 questionable structure)
Lactobacillus acidophilus NCFM     (1 CRISPR)
Lactobacillus amylovorus GRL 1112
Lactobacillus brevis ATCC 367     (2 CRISPRs)
Lactobacillus buchneri NRRL B-30929     (1 CRISPR, 2 questionable structures)
Lactobacillus casei ATCC 334     (1 CRISPR, 2 questionable structures)
Lactobacillus casei BL23     (1 CRISPR)
Lactobacillus casei str. Zhang     (1 CRISPR, 1 questionable structure)
Lactobacillus crispatus ST1     (3 CRISPRs)
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842     (1 CRISPR, 2 questionable structures)
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365     (1 CRISPR, 1 questionable structure)
Lactobacillus delbrueckii subsp. bulgaricus ND02     (1 CRISPR, 1 questionable structure)
Lactobacillus fermentum IFO 3956     (2 CRISPRs, 2 questionable structures)
Lactobacillus gasseri ATCC 33323
Lactobacillus helveticus DPC 4571     (2 CRISPRs, 1 questionable structure)
Lactobacillus johnsonii FI9785     (1 questionable structure)
Lactobacillus johnsonii NCC 533     (1 questionable structure)
Lactobacillus kefiranofaciens ZW3     (2 CRISPRs)
Lactobacillus plantarum JDM1
Lactobacillus plantarum subsp. plantarum ST-III
Lactobacillus plantarum WCFS1
Lactobacillus reuteri DSM 20016
Lactobacillus reuteri JCM 1112
Lactobacillus reuteri SD2112
Lactobacillus rhamnosus GG     (1 CRISPR, 1 questionable structure)
Lactobacillus rhamnosus Lc 705     (1 questionable structure)
Lactobacillus ruminis ATCC 27782     (2 CRISPRs)
Lactobacillus sakei subsp. sakei 23K
Lactobacillus salivarius subsp. salivarius     (1 CRISPR, 1 questionable structure)
Lactobacillus sanfranciscensis TMW 1.1304     (1 CRISPR)
Lactococcus garvieae ATCC 49156     (1 questionable structure)
Lactococcus lactis subsp. cremoris MG1363
Lactococcus lactis subsp. cremoris SK11
Lactococcus lactis subsp. lactis Il1403
Lactococcus lactis subsp. lactis KF147     (2 questionable structures)
Laribacter hongkongensis HLHK9
Lawsonia intracellularis PHE/MN1-00     (1 questionable structure)
Leadbetterella byssophila DSM 17132     (2 CRISPRs, 3 questionable structures)
Legionella longbeachae NSW150
Legionella pneumophila 2300/99 Alcoy     (1 CRISPR, 1 questionable structure)
Legionella pneumophila str. Corby     (2 questionable structures)
Legionella pneumophila str. Lens     (3 CRISPRs)
Legionella pneumophila str. Paris     (1 CRISPR)
Legionella pneumophila subsp. pneumophila ATCC 43290
Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Leifsonia xyli subsp. xyli str. CTCB07
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'     (1 questionable structure)
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'     (1 questionable structure)
Leptospira borgpetersenii serovar Hardjo-bovis JB197     (1 questionable structure)
Leptospira borgpetersenii serovar Hardjo-bovis L550     (1 questionable structure)
Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130     (1 CRISPR, 5 questionable structures)
Leptospira interrogans serovar Lai str. 56601     (1 questionable structure)
Leptospirillum ferrooxidans C2-3
Leptothrix cholodnii SP-6     (1 CRISPR)
Leptotrichia buccalis DSM 1135     (4 CRISPRs, 1 questionable structure)
Leuconostoc citreum KM20
Leuconostoc gasicomitatum LMG 18811
Leuconostoc kimchii IMSNU11154
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293     (1 questionable structure)
Leuconostoc mesenteroides subsp. mesenteroides J18
Leuconostoc sp. C2
Listeria innocua Clip11262     (1 CRISPR, 1 questionable structure)
Listeria ivanovii subsp. ivanovii PAM 55     (2 CRISPRs, 1 questionable structure)
Listeria monocytogenes 08-5578     (1 CRISPR, 2 questionable structures)
Listeria monocytogenes 08-5923     (1 CRISPR, 2 questionable structures)
Listeria monocytogenes Clip81459
Listeria monocytogenes EGD-e     (1 CRISPR, 3 questionable structures)
Listeria monocytogenes HCC23     (2 CRISPRs)
Listeria monocytogenes str. 4b F2365
Listeria seeligeri serovar 1/2b str. SLCC3954     (4 CRISPRs, 1 questionable structure)
Listeria welshimeri serovar 6b str. SLCC5334
Lysinibacillus sphaericus C3-41     (1 CRISPR, 1 questionable structure)
Macrococcus caseolyticus JCSC5402     (2 questionable structures)
Magnetococcus sp. MC-1     (1 CRISPR, 1 questionable structure)
Magnetospirillum magneticum AMB-1
Mahella australiensis 50-1 BON     (2 CRISPRs, 1 questionable structure)
Mannheimia succiniciproducens MBEL55E     (3 CRISPRs)
Maricaulis maris MCS10
Marinithermus hydrothermalis DSM 14884     (5 CRISPRs, 2 questionable structures)
Marinitoga piezophila KA3     (5 CRISPRs)
Marinobacter aquaeolei VT8
Marinomonas mediterranea MMB-1     (5 CRISPRs)
Marinomonas posidonica IVIA-Po-181
Marinomonas sp. MWYL1     (2 CRISPRs)
Marivirga tractuosa DSM 4126
Megasphaera elsdenii DSM 20460     (6 CRISPRs, 5 questionable structures)
Meiothermus ruber DSM 1279     (6 CRISPRs)
Meiothermus silvanus DSM 9946     (8 CRISPRs, 2 questionable structures)
Melissococcus plutonius ATCC 35311     (1 questionable structure)
Melissococcus plutonius DAT561     (1 CRISPR)
Mesoplasma florum L1     (1 questionable structure)
Mesorhizobium ciceri biovar biserrulae WSM1271     (4 questionable structures)
Mesorhizobium loti MAFF303099
Mesorhizobium opportunistum WSM2075     (3 questionable structures)
Mesorhizobium sp. BNC1
Methylacidiphilum infernorum V4     (5 CRISPRs)
Methylibium petroleiphilum PM1     (2 questionable structures)
Methylobacillus flagellatus KT     (2 CRISPRs)
Methylobacterium chloromethanicum CM4
Methylobacterium extorquens AM1     (2 questionable structures)
Methylobacterium extorquens DM4     (2 questionable structures)
Methylobacterium extorquens PA1     (2 questionable structures)
Methylobacterium nodulans ORS 2060     (4 CRISPRs, 4 questionable structures)
Methylobacterium populi BJ001
Methylobacterium radiotolerans JCM 2831
Methylobacterium sp. 4-46     (3 CRISPRs, 10 questionable structures)
Methylocella silvestris BL2     (1 questionable structure)
Methylococcus capsulatus str. Bath     (2 CRISPRs)
Methylomicrobium alcaliphilum     (3 CRISPRs, 1 questionable structure)
Methylomonas methanica MC09     (4 CRISPRs, 2 questionable structures)
Methylotenera mobilis JLW8
Methylotenera sp. 301
Methylovorus sp. MP688
Methylovorus sp. SIP3-4
Micavibrio aeruginosavorus ARL-13     (2 questionable structures)
Microbacterium testaceum StLB037     (7 questionable structures)
Micrococcus luteus NCTC 2665
Microcystis aeruginosa NIES-843     (3 CRISPRs, 18 questionable structures)
Microlunatus phosphovorus NM-1     (1 CRISPR, 3 questionable structures)
Micromonospora aurantiaca ATCC 27029     (5 questionable structures)
Micromonospora sp. L5
Mobiluncus curtisii ATCC 43063     (1 CRISPR)
Moorella thermoacetica ATCC 39073     (2 CRISPRs, 1 questionable structure)
Moraxella catarrhalis RH4     (2 CRISPRs, 1 questionable structure)
Muricauda ruestringensis DSM 13258     (1 questionable structure)
Mycobacterium abscessus
Mycobacterium africanum GM041182     (2 CRISPRs, 1 questionable structure)
Mycobacterium avium 104     (1 CRISPR, 6 questionable structures)
Mycobacterium avium subsp. paratuberculosis K-10     (1 questionable structure)
Mycobacterium bovis AF2122/97     (2 CRISPRs, 1 questionable structure)
Mycobacterium bovis BCG str. Mexico     (2 CRISPRs, 1 questionable structure)
Mycobacterium bovis BCG str. Pasteur 1173P2     (2 CRISPRs, 3 questionable structures)
Mycobacterium bovis BCG str. Tokyo 172     (2 CRISPRs, 1 questionable structure)
Mycobacterium canettii CIPT 140010059     (1 CRISPR, 2 questionable structures)
Mycobacterium gilvum PYR-GCK     (1 questionable structure)
Mycobacterium intracellulare MOTT-02     (3 questionable structures)
Mycobacterium intracellulare MOTT-64     (1 questionable structure)
Mycobacterium leprae Br4923
Mycobacterium leprae TN
Mycobacterium marinum M     (5 questionable structures)
Mycobacterium rhodesiae NBB3     (2 questionable structures)
Mycobacterium smegmatis str. MC2 155
Mycobacterium sp. JDM601     (5 questionable structures)
Mycobacterium sp. JLS     (3 questionable structures)
Mycobacterium sp. KMS     (4 questionable structures)
Mycobacterium sp. MCS     (2 questionable structures)
Mycobacterium sp. Spyr1
Mycobacterium tuberculosis CDC1551     (2 CRISPRs, 1 questionable structure)
Mycobacterium tuberculosis F11     (2 CRISPRs, 1 questionable structure)
Mycobacterium tuberculosis H37Ra     (2 CRISPRs, 1 questionable structure)
Mycobacterium tuberculosis H37Rv     (2 CRISPRs, 1 questionable structure)
Mycobacterium tuberculosis KZN 1435     (2 CRISPRs, 2 questionable structures)
Mycobacterium tuberculosis KZN 4207     (2 CRISPRs, 2 questionable structures)
Mycobacterium tuberculosis RGTB327     (3 CRISPRs, 1 questionable structure)
Mycobacterium ulcerans     (1 questionable structure)
Mycobacterium vanbaalenii PYR-1     (5 questionable structures)
Mycoplasma agalactiae
Mycoplasma agalactiae PG2
Mycoplasma arthritidis 158L3-1     (1 CRISPR)
Mycoplasma bovis Hubei-1
Mycoplasma bovis PG45
Mycoplasma capricolum subsp. capricolum ATCC 27343     (1 questionable structure)
Mycoplasma conjunctivae
Mycoplasma crocodyli MP145     (1 questionable structure)
Mycoplasma fermentans JER     (1 questionable structure)
Mycoplasma fermentans M64     (1 questionable structure)
Mycoplasma gallisepticum R     (2 CRISPRs, 2 questionable structures)
Mycoplasma genitalium G37
Mycoplasma haemocanis str. Illinois
Mycoplasma haemofelis str. Langford 1
Mycoplasma hominis     (2 questionable structures)
Mycoplasma hyopneumoniae 232     (1 questionable structure)
Mycoplasma hyopneumoniae 7448
Mycoplasma hyopneumoniae J     (1 questionable structure)
Mycoplasma hyorhinis GDL-1
Mycoplasma hyorhinis HUB-1
Mycoplasma leachii PG50     (6 questionable structures)
Mycoplasma mobile 163K     (1 CRISPR)
Mycoplasma mycoides subsp. capri LC str. 95010     (3 questionable structures)
Mycoplasma mycoides subsp. mycoides SC str. PG1
Mycoplasma penetrans HF-2     (1 questionable structure)
Mycoplasma pneumoniae 309     (2 questionable structures)
Mycoplasma pneumoniae M129     (2 questionable structures)
Mycoplasma pulmonis UAB CTIP
Mycoplasma putrefaciens KS1     (1 questionable structure)
Mycoplasma suis KI_3806
Mycoplasma suis str. Illinois
Mycoplasma synoviae 53     (1 CRISPR)
Myxococcus fulvus HW-1     (4 CRISPRs, 6 questionable structures)
Myxococcus xanthus DK 1622     (4 CRISPRs, 4 questionable structures)
Nakamurella multipartita DSM 44233     (7 CRISPRs, 1 questionable structure)
Natranaerobius thermophilus JW/NM-WN-LF
Nautilia profundicola AmH
Neisseria gonorrhoeae FA 1090     (3 CRISPRs, 1 questionable structure)
Neisseria gonorrhoeae NCCP11945     (8 CRISPRs, 1 questionable structure)
Neisseria lactamica 020-06     (6 CRISPRs, 2 questionable structures)
Neisseria meningitidis 053442     (5 CRISPRs, 3 questionable structures)
Neisseria meningitidis alpha14     (6 CRISPRs, 3 questionable structures)
Neisseria meningitidis FAM18     (2 CRISPRs, 4 questionable structures)
Neisseria meningitidis MC58     (2 CRISPRs, 5 questionable structures)
Neisseria meningitidis Z2491     (2 CRISPRs, 4 questionable structures)
Neorickettsia risticii str. Illinois
Neorickettsia sennetsu str. Miyayama     (1 questionable structure)
Niastella koreensis GR20-10     (1 CRISPR, 2 questionable structures)
Nitratifractor salsuginis DSM 16511     (2 CRISPRs, 1 questionable structure)
Nitratiruptor sp. SB155-2
Nitrobacter hamburgensis X14     (1 questionable structure)
Nitrobacter winogradskyi Nb-255     (1 CRISPR, 2 questionable structures)
Nitrosococcus halophilus Nc4     (6 CRISPRs, 1 questionable structure)
Nitrosococcus oceani ATCC 19707     (1 CRISPR)
Nitrosococcus watsoni C-113     (1 CRISPR, 2 questionable structures)
Nitrosomonas europaea ATCC 19718     (2 CRISPRs, 1 questionable structure)
Nitrosomonas eutropha C91     (3 CRISPRs)
Nitrosomonas sp. AL212     (2 CRISPRs)
Nitrosomonas sp. Is79A3
Nitrosospira multiformis ATCC 25196
Nocardia cyriacigeorgica GUH-2     (2 CRISPRs, 1 questionable structure)
Nocardia farcinica IFM 10152     (3 CRISPRs, 5 questionable structures)
Nocardioides sp. JS614     (34 questionable structures)
Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111     (9 CRISPRs, 3 questionable structures)
Nostoc punctiforme PCC 73102     (6 CRISPRs, 13 questionable structures)
Nostoc sp. PCC 7120     (13 CRISPRs, 5 questionable structures)
Novosphingobium aromaticivorans DSM 12444
Novosphingobium sp. PP1Y
Oceanimonas sp. GK1     (2 questionable structures)
Oceanithermus profundus DSM 14977     (1 CRISPR)
Oceanobacillus iheyensis HTE831     (3 questionable structures)
Ochrobactrum anthropi ATCC 49188     (1 questionable structure)
Odoribacter splanchnicus DSM 20712     (1 CRISPR, 5 questionable structures)
Oenococcus oeni PSU-1
Oligotropha carboxidovorans OM5
Olsenella uli DSM 7084     (1 CRISPR, 5 questionable structures)
Onion yellows phytoplasma OY-M
Opitutus terrae PB90-1     (1 questionable structure)
Orientia tsutsugamushi Boryong     (2 questionable structures)
Orientia tsutsugamushi str. Ikeda     (2 questionable structures)
Oscillibacter valericigenes Sjm18-20     (2 questionable structures)
Paenibacillus mucilaginosus 3016     (11 questionable structures)
Paenibacillus mucilaginosus KNP414     (5 questionable structures)
Paenibacillus polymyxa E681     (1 CRISPR)
Paenibacillus polymyxa SC2     (1 questionable structure)
Paenibacillus sp. JDR-2     (3 questionable structures)
Paenibacillus terrae HPL-003     (10 CRISPRs, 1 questionable structure)
Paludibacter propionicigenes WB4     (2 CRISPRs, 2 questionable structures)
Pantoea ananatis LMG 20103
Pantoea ananatis LMG 5342     (1 CRISPR)
Pantoea sp. At-9b     (2 questionable structures)
Pantoea vagans C9-1     (1 questionable structure)
Parabacteroides distasonis ATCC 8503     (1 CRISPR)
Parachlamydia acanthamoebae UV7
Paracoccus denitrificans PD1222     (1 CRISPR, 2 questionable structures)
Parvibaculum lavamentivorans DS-1     (1 CRISPR)
Parvularcula bermudensis HTCC2503     (1 CRISPR)
Pasteurella multocida 36950     (2 CRISPRs)
Pasteurella multocida subsp. multocida str. HN06     (2 CRISPRs)
Pasteurella multocida subsp. multocida str. Pm70     (4 CRISPRs)
Pectobacterium carotovorum subsp. carotovorum PC1     (2 CRISPRs)
Pectobacterium wasabiae WPP163     (4 CRISPRs, 2 questionable structures)
Pediococcus claussenii ATCC BAA-344
Pediococcus pentosaceus ATCC 25745
Pedobacter heparinus DSM 2366     (1 questionable structure)
Pedobacter saltans DSM 12145     (2 questionable structures)
Pelagibacterium halotolerans B2     (1 questionable structure)
Pelobacter carbinolicus DSM 2380     (1 CRISPR)
Pelobacter propionicus DSM 2379     (2 CRISPRs, 1 questionable structure)
Pelodictyon luteolum DSM 273     (1 CRISPR)
Pelodictyon phaeoclathratiforme BU-1     (3 CRISPRs, 2 questionable structures)
Pelotomaculum thermopropionicum SI     (5 CRISPRs)
Persephonella marina EX-H1     (5 CRISPRs)
Petrotoga mobilis SJ95     (2 CRISPRs, 1 questionable structure)
Phenylobacterium zucineum HLK1
Photobacterium profundum SS9     (2 CRISPRs, 1 questionable structure)
Photorhabdus asymbiotica     (6 CRISPRs, 3 questionable structures)
Photorhabdus luminescens subsp. laumondii TTO1     (6 CRISPRs, 3 questionable structures)
Phycisphaera mikurensis NBRC 102666     (1 CRISPR, 4 questionable structures)
Pirellula staleyi DSM 6068     (2 CRISPRs, 3 questionable structures)
Planctomyces brasiliensis DSM 5305     (2 CRISPRs, 1 questionable structure)
Planctomyces limnophilus DSM 3776     (1 CRISPR, 1 questionable structure)
Polaromonas naphthalenivorans CJ2     (3 questionable structures)
Polaromonas sp. JS666     (7 questionable structures)
Polymorphum gilvum SL003B-26A1     (1 CRISPR)
Polynucleobacter necessarius STIR1
Polynucleobacter sp. QLW-P1DMWA-1
Porphyromonas asaccharolytica DSM 20707     (1 CRISPR, 3 questionable structures)
Porphyromonas gingivalis ATCC 33277     (4 CRISPRs, 7 questionable structures)
Porphyromonas gingivalis TDC60     (5 CRISPRs, 2 questionable structures)
Porphyromonas gingivalis W83     (4 CRISPRs, 1 questionable structure)
Prevotella denticola F0289     (2 CRISPRs, 1 questionable structure)
Prevotella melaninogenica ATCC 25845     (3 questionable structures)
Prevotella ruminicola 23     (1 CRISPR, 1 questionable structure)
Prochlorococcus marinus str. AS9601     (1 questionable structure)
Prochlorococcus marinus str. MIT 9211
Prochlorococcus marinus str. MIT 9215
Prochlorococcus marinus str. MIT 9301
Prochlorococcus marinus str. MIT 9303     (2 questionable structures)
Prochlorococcus marinus str. MIT 9312
Prochlorococcus marinus str. MIT 9313
Prochlorococcus marinus str. MIT 9515     (1 questionable structure)
Prochlorococcus marinus str. NATL1A
Prochlorococcus marinus str. NATL2A
Prochlorococcus marinus subsp. marinus str. CCMP1375
Prochlorococcus marinus subsp. pastoris str. CCMP1986
Propionibacterium acnes KPA171202
Propionibacterium acnes SK137
Propionibacterium acnes TypeIA2 P.acn17     (1 questionable structure)
Propionibacterium acnes TypeIA2 P.acn31     (1 questionable structure)
Propionibacterium acnes TypeIA2 P.acn33     (1 questionable structure)
Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1     (1 CRISPR)
Prosthecochloris aestuarii DSM 271     (5 CRISPRs, 1 questionable structure)
Prosthecochloris vibrioformis DSM 265     (2 CRISPRs)
Proteus mirabilis
Proteus mirabilis HI4320
Pseudoalteromonas atlantica T6c     (1 questionable structure)
Pseudoalteromonas haloplanktis TAC125     (1 questionable structure)
Pseudoalteromonas sp. SM9913     (1 questionable structure)
Pseudogulbenkiania sp. NH8B     (1 CRISPR)
Pseudomonas aeruginosa LESB58     (1 CRISPR)
Pseudomonas aeruginosa PA7     (2 CRISPRs, 1 questionable structure)
Pseudomonas aeruginosa PAO1
Pseudomonas aeruginosa UCBPP-PA14     (2 CRISPRs)
Pseudomonas brassicacearum subsp. brassicacearum NFM421     (1 questionable structure)
Pseudomonas entomophila L48     (1 questionable structure)
Pseudomonas fluorescens F113     (3 questionable structures)
Pseudomonas fluorescens Pf-5     (2 questionable structures)
Pseudomonas fluorescens PfO-1
Pseudomonas fluorescens SBW25
Pseudomonas fulva 12-X     (1 CRISPR)
Pseudomonas mendocina NK-01
Pseudomonas mendocina ymp     (2 CRISPRs)
Pseudomonas putida F1     (1 questionable structure)
Pseudomonas putida GB-1
Pseudomonas putida KT2440     (2 questionable structures)
Pseudomonas putida S16     (1 questionable structure)
Pseudomonas putida W619     (1 questionable structure)
Pseudomonas stutzeri A1501     (1 CRISPR)
Pseudomonas stutzeri ATCC 17588 = LMG 11199     (1 questionable structure)
Pseudomonas syringae pv. phaseolicola 1448A     (2 questionable structures)
Pseudomonas syringae pv. syringae B728a     (1 questionable structure)
Pseudomonas syringae pv. tomato str. DC3000
Pseudonocardia dioxanivorans CB1190     (6 questionable structures)
Pseudovibrio sp. FO-BEG1
Pseudoxanthomonas spadix BD-a59     (1 CRISPR, 4 questionable structures)
Pseudoxanthomonas suwonensis 11-1     (1 questionable structure)
Psychrobacter arcticus 273-4     (1 questionable structure)
Psychrobacter cryohalolentis K5
Psychrobacter sp. PRwf-1     (1 CRISPR)
Psychromonas ingrahamii 37     (1 CRISPR, 22 questionable structures)
Pusillimonas sp. T7-7     (2 questionable structures)
Rahnella aquatilis CIP 78.65 = ATCC 33071     (3 CRISPRs)
Rahnella aquatilis HX2     (1 CRISPR, 1 questionable structure)
Rahnella sp. Y9602     (1 CRISPR)
Ralstonia eutropha H16
Ralstonia eutropha JMP134
Ralstonia metallidurans CH34     (1 questionable structure)
Ralstonia pickettii 12D
Ralstonia pickettii 12J
Ralstonia solanacearum CFBP2957     (2 CRISPRs, 1 questionable structure)
Ralstonia solanacearum GMI1000
Ralstonia solanacearum PSI07     (1 questionable structure)
Ramlibacter tataouinensis TTB310     (3 CRISPRs)
Renibacterium salmoninarum ATCC 33209
Rhizobium etli CFN 42
Rhizobium etli CIAT 652
Rhizobium leguminosarum bv. trifolii WSM1325     (1 questionable structure)
Rhizobium leguminosarum bv. trifolii WSM2304     (1 questionable structure)
Rhizobium leguminosarum bv. viciae 3841     (3 questionable structures)
Rhizobium sp. NGR234
Rhodobacter capsulatus SB 1003     (6 CRISPRs)
Rhodobacter sphaeroides 2.4.1     (1 questionable structure)
Rhodobacter sphaeroides ATCC 17025     (1 questionable structure)
Rhodobacter sphaeroides ATCC 17029     (1 questionable structure)
Rhodobacter sphaeroides KD131     (1 CRISPR, 2 questionable structures)
Rhodococcus equi 103S     (2 questionable structures)
Rhodococcus erythropolis PR4     (3 questionable structures)
Rhodococcus opacus B4
Rhodococcus sp. RHA1
Rhodoferax ferrireducens T118     (2 CRISPRs, 4 questionable structures)
Rhodomicrobium vannielii ATCC 17100     (4 CRISPRs)
Rhodopirellula baltica SH 1     (1 questionable structure)
Rhodopseudomonas palustris BisA53     (2 questionable structures)
Rhodopseudomonas palustris BisB18     (1 CRISPR, 1 questionable structure)
Rhodopseudomonas palustris BisB5     (1 CRISPR, 1 questionable structure)
Rhodopseudomonas palustris CGA009     (1 questionable structure)
Rhodopseudomonas palustris DX-1     (1 CRISPR, 1 questionable structure)
Rhodopseudomonas palustris HaA2     (2 questionable structures)
Rhodopseudomonas palustris TIE-1
Rhodospirillum centenum SW     (7 CRISPRs, 1 questionable structure)
Rhodospirillum photometricum DSM 122     (4 CRISPRs)
Rhodospirillum rubrum ATCC 11170     (12 CRISPRs, 2 questionable structures)
Rhodothermus marinus DSM 4252     (10 CRISPRs, 3 questionable structures)
Rhodothermus marinus SG0.5JP17-172     (11 CRISPRs, 3 questionable structures)
Rickettsia africae ESF-5
Rickettsia akari str. Hartford
Rickettsia australis str. Cutlack
Rickettsia bellii OSU 85-389     (1 questionable structure)
Rickettsia bellii RML369-C     (2 questionable structures)
Rickettsia canadensis str. CA410
Rickettsia canadensis str. McKiel
Rickettsia conorii str. Malish 7     (1 questionable structure)
Rickettsia felis URRWXCal2
Rickettsia heilongjiangensis 054     (1 questionable structure)
Rickettsia japonica YH
Rickettsia massiliae MTU5
Rickettsia massiliae str. AZT80
Rickettsia montanensis str. OSU 85-930
Rickettsia parkeri str. Portsmouth
Rickettsia peacockii str. Rustic
Rickettsia philipii str. 364D
Rickettsia prowazekii str. BuV67-CWPP
Rickettsia prowazekii str. Chernikova
Rickettsia prowazekii str. Dachau
Rickettsia prowazekii str. GvV257
Rickettsia prowazekii str. Katsinyian
Rickettsia prowazekii str. Madrid E
Rickettsia prowazekii str. RpGvF24
Rickettsia rhipicephali str. 3-7-female6-CWPP
Rickettsia rickettsii str. 'Sheila Smith'
Rickettsia rickettsii str. Arizona
Rickettsia rickettsii str. Brazil     (1 questionable structure)
Rickettsia rickettsii str. Colombia     (1 questionable structure)
Rickettsia rickettsii str. Hauke
Rickettsia rickettsii str. Hino
Rickettsia rickettsii str. Hlp#2
Rickettsia rickettsii str. Iowa
Rickettsia slovaca 13-B
Rickettsia slovaca str. D-CWPP
Rickettsia typhi str. B9991CWPP
Rickettsia typhi str. TH1527
Rickettsia typhi str. Wilmington
Riemerella anatipestifer DSM 15868     (5 CRISPRs, 3 questionable structures)
Robiginitalea biformata HTCC2501     (2 questionable structures)
Roseburia hominis A2-183     (1 CRISPR, 7 questionable structures)
Roseiflexus castenholzii DSM 13941     (7 CRISPRs, 35 questionable structures)
Roseiflexus sp. RS-1     (14 CRISPRs, 23 questionable structures)
Roseobacter denitrificans OCh 114
Roseobacter litoralis Och 149
Rothia dentocariosa ATCC 17931     (2 CRISPRs, 1 questionable structure)
Rothia mucilaginosa DY-18     (2 CRISPRs, 7 questionable structures)
Rubrivivax gelatinosus IL144     (2 CRISPRs, 1 questionable structure)
Rubrobacter xylanophilus DSM 9941     (4 CRISPRs, 1 questionable structure)
Ruminococcus albus 7     (4 CRISPRs, 4 questionable structures)
Runella slithyformis DSM 19594     (2 CRISPRs, 1 questionable structure)
Saccharomonospora viridis DSM 43017     (10 CRISPRs)
Saccharophagus degradans 2-40     (1 questionable structure)
Saccharopolyspora erythraea NRRL 2338     (4 CRISPRs, 3 questionable structures)
Salinibacter ruber
Salinibacter ruber DSM 13855
Salinibacter ruber M8
Salinispora arenicola CNS-205     (8 CRISPRs)
Salinispora tropica CNB-440     (3 CRISPRs)
Salmonella bongori NCTC 12419     (2 CRISPRs)
Salmonella enterica subsp. arizonae serovar 62:z4,z23:--     (1 questionable structure)
Salmonella enterica subsp. enterica serovar Agona str. SL483     (2 CRISPRs)
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67     (2 CRISPRs)
Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853     (2 CRISPRs)
Salmonella enterica subsp. enterica serovar Enteritidis str. P125109     (2 CRISPRs)
Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91     (2 CRISPRs)
Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078     (2 CRISPRs)
Salmonella enterica subsp. enterica serovar Heidelberg str. SL476     (3 CRISPRs)
Salmonella enterica subsp. enterica serovar Newport str. SL254     (2 CRISPRs)
Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601     (2 CRISPRs, 1 questionable structure)
Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150     (2 CRISPRs, 1 questionable structure)
Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7     (2 CRISPRs, 1 questionable structure)
Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594     (2 CRISPRs)
Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633     (2 CRISPRs)
Salmonella enterica subsp. enterica serovar Typhi str. CT18     (1 CRISPR)
Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12     (1 CRISPR)
Salmonella enterica subsp. enterica serovar Typhi Ty2     (1 CRISPR)
Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S     (3 CRISPRs)
Salmonella enterica subsp. enterica serovar Typhimurium str. 798     (2 CRISPRs)
Salmonella enterica subsp. enterica serovar Typhimurium str. D23580     (3 CRISPRs)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344     (3 CRISPRs)
Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74     (3 CRISPRs)
Salmonella enterica subsp. enterica serovar Typhimurium str. T000240     (3 CRISPRs)
Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1     (3 CRISPRs)
Salmonella typhimurium LT2     (3 CRISPRs)
Sanguibacter keddieii DSM 10542     (2 questionable structures)
Saprospira grandis str. Lewin     (3 CRISPRs, 5 questionable structures)
Sebaldella termitidis ATCC 33386     (4 CRISPRs, 2 questionable structures)
Segniliparus rotundus DSM 44985     (3 questionable structures)
Selenomonas ruminantium subsp. lactilytica TAM6421     (1 CRISPR, 2 questionable structures)
Selenomonas sputigena ATCC 35185     (4 CRISPRs, 1 questionable structure)
Serratia proteamaculans 568     (1 questionable structure)
Serratia sp. AS12     (1 CRISPR, 1 questionable structure)
Serratia sp. AS9     (1 CRISPR, 1 questionable structure)
Serratia symbiotica str. 'Cinara cedri'
Shewanella amazonensis SB2B     (4 questionable structures)
Shewanella baltica OS155     (2 questionable structures)
Shewanella baltica OS185     (1 CRISPR)
Shewanella baltica OS195     (1 CRISPR, 1 questionable structure)
Shewanella baltica OS223
Shewanella baltica OS678     (1 CRISPR, 1 questionable structure)
Shewanella denitrificans OS217
Shewanella frigidimarina NCIMB 400
Shewanella halifaxensis HAW-EB4     (1 questionable structure)
Shewanella loihica PV-4     (1 questionable structure)
Shewanella oneidensis MR-1     (3 questionable structures)
Shewanella pealeana ATCC 700345     (3 questionable structures)
Shewanella piezotolerans WP3     (1 CRISPR)
Shewanella putrefaciens CN-32     (1 CRISPR, 1 questionable structure)
Shewanella sediminis HAW-EB3     (2 questionable structures)
Shewanella sp. ANA-3     (1 CRISPR)
Shewanella sp. MR-4     (1 questionable structure)
Shewanella sp. MR-7
Shewanella sp. W3-18-1     (2 CRISPRs, 5 questionable structures)
Shewanella violacea DSS12     (1 CRISPR, 3 questionable structures)
Shewanella woodyi ATCC 51908     (2 questionable structures)
Shigella boydii CDC 3083-94     (1 questionable structure)
Shigella boydii Sb227     (1 CRISPR, 1 questionable structure)
Shigella dysenteriae Sd197     (1 questionable structure)
Shigella flexneri 2a str. 2457T     (1 CRISPR, 1 questionable structure)
Shigella flexneri 2a str. 301     (1 CRISPR, 1 questionable structure)
Shigella flexneri 5 str. 8401     (1 CRISPR, 2 questionable structures)
Shigella sonnei
Shigella sonnei 53G     (2 CRISPRs, 2 questionable structures)
Shigella sonnei Ss046     (2 CRISPRs, 2 questionable structures)
Sideroxydans lithotrophicus ES-1     (1 questionable structure)
Silicibacter pomeroyi DSS-3
Silicibacter sp. TM1040
Simkania negevensis Z
Sinorhizobium fredii HH103
Sinorhizobium medicae WSM419
Sinorhizobium meliloti 1021     (1 questionable structure)
Sinorhizobium meliloti AK83
Slackia heliotrinireducens DSM 20476     (2 questionable structures)
Sodalis glossinidius str. 'morsitans'     (1 questionable structure)
Solibacter usitatus Ellin6076     (3 questionable structures)
Sorangium cellulosum 'So ce 56'     (5 CRISPRs, 9 questionable structures)
Sphaerobacter thermophilus DSM 20745     (1 CRISPR, 5 questionable structures)
Sphaerochaeta pleomorpha str. Grapes     (1 CRISPR)
Sphingobacterium sp. 21     (3 CRISPRs, 3 questionable structures)
Sphingobium chlorophenolicum L-1
Sphingobium japonicum UT26S
Sphingobium sp. SYK-6     (1 CRISPR)
Sphingomonas wittichii RW1     (1 questionable structure)
Sphingopyxis alaskensis RB2256
Spirochaeta africana DSM 8902     (1 CRISPR, 2 questionable structures)
Spirochaeta caldaria DSM 7334     (2 CRISPRs, 1 questionable structure)
Spirochaeta coccoides DSM 17374     (2 CRISPRs, 1 questionable structure)
Spirochaeta smaragdinae DSM 11293     (1 CRISPR)
Spirochaeta sp. Buddy     (1 CRISPR, 1 questionable structure)
Spirochaeta thermophila DSM 6192     (1 CRISPR, 2 questionable structures)
Spirosoma linguale DSM 74     (1 CRISPR, 2 questionable structures)
Stackebrandtia nassauensis DSM 44728     (3 CRISPRs, 4 questionable structures)
Staphylococcus aureus RF122     (5 questionable structures)
Staphylococcus aureus subsp. aureus
Staphylococcus aureus subsp. aureus COL     (5 questionable structures)
Staphylococcus aureus subsp. aureus ED98     (9 questionable structures)
Staphylococcus aureus subsp. aureus JH1     (8 questionable structures)
Staphylococcus aureus subsp. aureus JH9     (8 questionable structures)
Staphylococcus aureus subsp. aureus M013     (5 questionable structures)
Staphylococcus aureus subsp. aureus MRSA252     (4 questionable structures)
Staphylococcus aureus subsp. aureus MSHR1132     (2 CRISPRs, 2 questionable structures)
Staphylococcus aureus subsp. aureus MSSA476     (10 questionable structures)
Staphylococcus aureus subsp. aureus Mu3     (8 questionable structures)
Staphylococcus aureus subsp. aureus Mu50     (8 questionable structures)
Staphylococcus aureus subsp. aureus MW2     (9 questionable structures)
Staphylococcus aureus subsp. aureus N315     (9 questionable structures)
Staphylococcus aureus subsp. aureus NCTC 8325     (3 questionable structures)
Staphylococcus aureus subsp. aureus str. Newman     (4 questionable structures)
Staphylococcus aureus subsp. aureus USA300     (3 questionable structures)
Staphylococcus aureus subsp. aureus USA300_TCH1516     (4 questionable structures)
Staphylococcus aureus subsp. aureus VC40     (3 questionable structures)
Staphylococcus carnosus subsp. carnosus TM300
Staphylococcus epidermidis ATCC 12228     (1 questionable structure)
Staphylococcus epidermidis RP62A     (1 CRISPR, 1 questionable structure)
Staphylococcus haemolyticus JCSC1435     (1 questionable structure)
Staphylococcus lugdunensis HKU09-01     (1 CRISPR, 4 questionable structures)
Staphylococcus pseudintermedius HKU10-03
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305
Starkeya novella DSM 506     (1 questionable structure)
Stenotrophomonas maltophilia JV3     (1 questionable structure)
Stenotrophomonas maltophilia K279a     (4 questionable structures)
Stenotrophomonas maltophilia R551-3     (6 questionable structures)
Stigmatella aurantiaca DW4/3-1     (4 questionable structures)
Streptobacillus moniliformis DSM 12112     (1 CRISPR)
Streptococcus agalactiae 2603V/R     (1 CRISPR)
Streptococcus agalactiae A909     (1 CRISPR)
Streptococcus agalactiae NEM316     (1 CRISPR, 1 questionable structure)
Streptococcus dysgalactiae subsp. equisimilis GGS_124     (1 CRISPR)
Streptococcus equi subsp. equi 4047     (3 questionable structures)
Streptococcus equi subsp. zooepidemicus     (1 CRISPR, 2 questionable structures)
Streptococcus equi subsp. zooepidemicus MGCS10565     (2 CRISPRs, 2 questionable structures)
Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069     (2 CRISPRs, 1 questionable structure)
Streptococcus gallolyticus UCN34     (2 CRISPRs)
Streptococcus gordonii str. Challis substr. CH1     (1 CRISPR, 1 questionable structure)
Streptococcus infantarius subsp. infantarius CJ18     (1 CRISPR)
Streptococcus macedonicus
Streptococcus macedonicus ACA-DC 198     (1 CRISPR)
Streptococcus mitis B6     (1 questionable structure)
Streptococcus mutans NN2025     (2 CRISPRs)
Streptococcus mutans UA159     (1 CRISPR)
Streptococcus oralis Uo5     (1 CRISPR)
Streptococcus parasanguinis ATCC 15912     (1 CRISPR, 2 questionable structures)
Streptococcus parauberis KCTC 11537
Streptococcus pasteurianus ATCC 43144     (1 CRISPR)
Streptococcus pneumoniae 670-6B     (1 questionable structure)
Streptococcus pneumoniae 70585     (1 questionable structure)
Streptococcus pneumoniae AP200
Streptococcus pneumoniae ATCC 700669     (1 questionable structure)
Streptococcus pneumoniae CGSP14
Streptococcus pneumoniae D39     (1 questionable structure)
Streptococcus pneumoniae G54
Streptococcus pneumoniae Hungary19A-6
Streptococcus pneumoniae JJA     (1 questionable structure)
Streptococcus pneumoniae P1031     (1 questionable structure)
Streptococcus pneumoniae R6     (1 questionable structure)
Streptococcus pneumoniae Taiwan19F-14     (2 questionable structures)
Streptococcus pneumoniae TCH8431/19A     (2 questionable structures)
Streptococcus pneumoniae TIGR4
Streptococcus pseudopneumoniae IS7493
Streptococcus pyogenes M1 GAS     (2 CRISPRs)
Streptococcus pyogenes MGAS10270     (2 CRISPRs)
Streptococcus pyogenes MGAS10394
Streptococcus pyogenes MGAS10750     (1 CRISPR)
Streptococcus pyogenes MGAS15252     (1 CRISPR)
Streptococcus pyogenes MGAS2096     (1 CRISPR)
Streptococcus pyogenes MGAS315
Streptococcus pyogenes MGAS5005     (2 CRISPRs)
Streptococcus pyogenes MGAS6180     (2 CRISPRs, 1 questionable structure)
Streptococcus pyogenes MGAS8232
Streptococcus pyogenes MGAS9429     (1 CRISPR)
Streptococcus pyogenes NZ131     (2 CRISPRs)
Streptococcus pyogenes SSI-1
Streptococcus pyogenes str. Manfredo     (2 questionable structures)
Streptococcus salivarius CCHSS3     (1 CRISPR, 1 questionable structure)
Streptococcus sanguinis SK36     (3 CRISPRs, 1 questionable structure)
Streptococcus suis 05ZYH33     (1 questionable structure)
Streptococcus suis 98HAH33     (1 questionable structure)
Streptococcus suis BM407     (1 questionable structure)
Streptococcus suis P1/7     (1 questionable structure)
Streptococcus suis SC84     (1 questionable structure)
Streptococcus suis ST3     (1 CRISPR, 1 questionable structure)
Streptococcus thermophilus CNRZ1066     (1 CRISPR)
Streptococcus thermophilus LMD-9     (3 CRISPRs, 1 questionable structure)
Streptococcus thermophilus LMG 18311     (2 CRISPRs)
Streptococcus uberis 0140J
Streptomyces avermitilis MA-4680     (3 CRISPRs, 4 questionable structures)
Streptomyces bingchenggensis BCW-1     (3 CRISPRs, 7 questionable structures)
Streptomyces cattleya NRRL 8057     (1 CRISPR, 4 questionable structures)
Streptomyces coelicolor A3(2)     (1 CRISPR, 2 questionable structures)
Streptomyces flavogriseus ATCC 33331     (4 CRISPRs, 2 questionable structures)
Streptomyces griseus subsp. griseus NBRC 13350     (3 CRISPRs, 7 questionable structures)
Streptomyces scabiei 87.22     (2 questionable structures)
Streptomyces sp. SirexAA-E     (4 questionable structures)
Streptomyces violaceusniger Tu 4113     (5 CRISPRs, 12 questionable structures)
Streptosporangium roseum DSM 43021
Sulfobacillus acidophilus DSM 10332     (2 CRISPRs)
Sulfobacillus acidophilus TPY     (2 CRISPRs)
Sulfuricurvum kujiense DSM 16994
Sulfurihydrogenibium azorense Az-Fu1     (13 CRISPRs)
Sulfurihydrogenibium sp. YO3AOP1     (3 CRISPRs, 3 questionable structures)
Sulfurimonas autotrophica DSM 16294
Sulfurospirillum deleyianum DSM 6946     (1 CRISPR, 2 questionable structures)
Sulfurovum sp. NBC37-1     (3 questionable structures)
Symbiobacterium thermophilum IAM 14863     (3 CRISPRs)
Synechococcus elongatus PCC 6301
Synechococcus elongatus PCC 7942
Synechococcus sp. CC9311
Synechococcus sp. CC9605
Synechococcus sp. CC9902     (1 questionable structure)
Synechococcus sp. JA-2-3B'a(2-13)     (6 CRISPRs, 4 questionable structures)
Synechococcus sp. JA-3-3Ab     (9 CRISPRs, 1 questionable structure)
Synechococcus sp. PCC 7002     (3 CRISPRs)
Synechococcus sp. RCC307
Synechococcus sp. WH 7803
Synechococcus sp. WH 8102
Synechocystis sp. PCC 6803     (3 CRISPRs)
Synechocystis sp. PCC 6803 substr. GT-I
Synechocystis sp. PCC 6803 substr. PCC-N
Synechocystis sp. PCC 6803 substr. PCC-P
Syntrophobacter fumaroxidans MPOB     (2 CRISPRs, 10 questionable structures)
Syntrophobotulus glycolicus DSM 8271     (3 CRISPRs)
Syntrophomonas wolfei subsp. wolfei str. Goettingen     (5 CRISPRs, 1 questionable structure)
Syntrophothermus lipocalidus DSM 12680     (2 CRISPRs, 1 questionable structure)
Syntrophus aciditrophicus SB     (2 CRISPRs, 1 questionable structure)
Tannerella forsythia ATCC 43037     (1 CRISPR, 3 questionable structures)
Taylorella asinigenitalis MCE3     (1 CRISPR, 1 questionable structure)
Taylorella equigenitalis MCE9
Tepidanaerobacter sp. Re1     (5 CRISPRs, 2 questionable structures)
Teredinibacter turnerae T7901     (2 CRISPRs, 1 questionable structure)
Terriglobus saanensis SP1PR4
Tetragenococcus halophilus NBRC 12172     (1 questionable structure)
Thauera sp. MZ1T     (1 CRISPR, 4 questionable structures)
Thermaerobacter marianensis DSM 12885     (2 CRISPRs)
Thermanaerovibrio acidaminovorans DSM 6589
Thermincola sp. JR     (7 CRISPRs)
Thermoanaerobacter brockii subsp. finnii Ako-1     (5 CRISPRs)
Thermoanaerobacter italicus Ab9     (4 CRISPRs)
Thermoanaerobacter mathranii subsp. mathranii str. A3     (3 CRISPRs)
Thermoanaerobacter pseudethanolicus ATCC 33223     (7 CRISPRs)
Thermoanaerobacter sp. X513     (4 CRISPRs)
Thermoanaerobacter sp. X514     (4 CRISPRs)
Thermoanaerobacter tengcongensis MB4     (3 CRISPRs)
Thermoanaerobacter wiegelii Rt8.B1     (3 CRISPRs)
Thermoanaerobacterium thermosaccharolyticum DSM 571     (5 CRISPRs)
Thermoanaerobacterium xylanolyticum LX-11     (3 CRISPRs, 1 questionable structure)
Thermobaculum terrenum ATCC BAA-798     (5 CRISPRs, 3 questionable structures)
Thermobifida fusca YX     (14 CRISPRs, 2 questionable structures)
Thermobispora bispora DSM 43833     (6 CRISPRs, 5 questionable structures)
Thermocrinis albus DSM 14484     (5 CRISPRs)
Thermodesulfatator indicus DSM 15286     (3 CRISPRs, 1 questionable structure)
Thermodesulfobacterium sp. OPB45     (2 CRISPRs, 1 questionable structure)
Thermodesulfobium narugense DSM 14796     (3 CRISPRs)
Thermodesulfovibrio yellowstonii DSM 11347     (5 CRISPRs)
Thermomicrobium roseum DSM 5159     (1 CRISPR, 2 questionable structures)
Thermomonospora curvata DSM 43183     (15 CRISPRs, 5 questionable structures)
Thermosediminibacter oceani DSM 16646     (6 CRISPRs)
Thermosipho africanus TCF52B     (12 CRISPRs)
Thermosipho melanesiensis BI429     (5 CRISPRs)
Thermosynechococcus elongatus BP-1     (1 questionable structure)
Thermotoga lettingae TMO     (2 CRISPRs)
Thermotoga maritima MSB8     (8 CRISPRs)
Thermotoga naphthophila RKU-10     (8 CRISPRs)
Thermotoga neapolitana DSM 4359     (8 CRISPRs)
Thermotoga petrophila     (8 CRISPRs, 1 questionable structure)
Thermotoga sp. RQ2     (8 CRISPRs)
Thermotoga thermarum DSM 5069     (6 CRISPRs)
Thermovibrio ammonificans HB-1     (8 CRISPRs, 1 questionable structure)
Thermovirga lienii DSM 17291     (2 CRISPRs)
Thermus scotoductus SA-01     (3 CRISPRs, 1 questionable structure)
Thermus thermophilus HB27     (10 CRISPRs)
Thermus thermophilus HB8     (11 CRISPRs)
Thioalkalimicrobium cyclicum ALM1
Thioalkalivibrio sp. HL-EbGR7     (3 CRISPRs, 5 questionable structures)
Thioalkalivibrio sp. K90mix     (2 CRISPRs)
Thiobacillus denitrificans ATCC 25259
Thiomicrospira crunogena XCL-2
Thiomicrospira denitrificans ATCC 33889     (1 questionable structure)
Thiomonas intermedia K12     (3 questionable structures)
Tolumonas auensis DSM 9187     (1 CRISPR, 1 questionable structure)
Treponema azotonutricium ZAS-9     (2 CRISPRs, 1 questionable structure)
Treponema brennaborense DSM 12168     (2 CRISPRs, 8 questionable structures)
Treponema denticola ATCC 35405     (1 CRISPR)
Treponema pallidum subsp. pallidum DAL-1
Treponema pallidum subsp. pallidum SS14
Treponema pallidum subsp. pallidum str. Nichols
Treponema pallidum subsp. pertenue str. CDC2
Treponema pallidum subsp. pertenue str. Gauthier
Treponema pallidum subsp. pertenue str. SamoaD
Treponema paraluiscuniculi Cuniculi A
Treponema primitia ZAS-2     (1 CRISPR, 1 questionable structure)
Treponema succinifaciens DSM 2489     (1 CRISPR)
Trichodesmium erythraeum IMS101     (1 CRISPR, 18 questionable structures)
Tropheryma whipplei str. Twist
Tropheryma whipplei TW08/27     (1 questionable structure)
Truepera radiovictrix DSM 17093     (9 CRISPRs)
Tsukamurella paurometabola DSM 20162
Ureaplasma parvum serovar 3 str. ATCC 27815
Ureaplasma parvum serovar 3 str. ATCC 700970
Ureaplasma urealyticum serovar 10 str. ATCC 33699
Variovorax paradoxus EPS     (1 questionable structure)
Variovorax paradoxus S110
Veillonella parvula DSM 2008     (10 CRISPRs)
Verminephrobacter eiseniae EF01-2     (3 CRISPRs)
Verrucosispora maris AB-18-032     (2 CRISPRs, 2 questionable structures)
Vibrio anguillarum 775     (1 questionable structure)
Vibrio cholerae IEC224
Vibrio cholerae M66-2
Vibrio cholerae MJ-1236
Vibrio cholerae O1 biovar eltor str. N16961
Vibrio cholerae O1 str. 2010EL-1786
Vibrio cholerae O395     (2 CRISPRs, 1 questionable structure)
Vibrio fischeri ES114
Vibrio fischeri MJ11     (1 questionable structure)
Vibrio furnissii NCTC 11218
Vibrio harveyi ATCC BAA-1116     (1 CRISPR, 2 questionable structures)
Vibrio parahaemolyticus RIMD 2210633     (1 CRISPR)
Vibrio sp. EJY3
Vibrio sp. Ex25     (1 questionable structure)
Vibrio splendidus LGP32
Vibrio vulnificus CMCP6     (1 questionable structure)
Vibrio vulnificus MO6-24/O     (1 questionable structure)
Vibrio vulnificus YJ016     (2 CRISPRs)
Waddlia chondrophila WSU 86-1044     (1 questionable structure)
Weeksella virosa DSM 16922     (1 CRISPR)
Weissella koreensis KACC 15510     (1 questionable structure)
Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis
Wigglesworthia glossinidia endosymbiont of Glossina morsitans morsitans (Yale colony)
Wolbachia endosymbiont of Culex quinquefasciatus Pel
Wolbachia endosymbiont of Drosophila melanogaster     (2 questionable structures)
Wolbachia endosymbiont strain TRS of Brugia malayi
Wolbachia sp. wRi     (2 questionable structures)
Wolinella succinogenes DSM 1740     (2 CRISPRs)
Xanthobacter autotrophicus Py2     (1 questionable structure)
Xanthomonas albilineans     (6 CRISPRs)
Xanthomonas axonopodis pv. citri str. 306     (1 CRISPR, 1 questionable structure)
Xanthomonas axonopodis pv. citrumelo F1
Xanthomonas campestris pv. campestris str. 8004     (1 questionable structure)
Xanthomonas campestris pv. campestris str. ATCC 33913     (1 questionable structure)
Xanthomonas campestris pv. campestris str. B100     (1 questionable structure)
Xanthomonas campestris pv. vesicatoria str. 85-10     (2 questionable structures)
Xanthomonas oryzae pv. oryzae KACC10331     (1 CRISPR)
Xanthomonas oryzae pv. oryzae MAFF 311018     (1 CRISPR)
Xanthomonas oryzae pv. oryzae PXO99A     (1 CRISPR)
Xenorhabdus bovienii SS-2004     (3 CRISPRs, 3 questionable structures)
Xenorhabdus nematophila ATCC 19061     (4 CRISPRs, 1 questionable structure)
Xylanimonas cellulosilytica DSM 15894     (8 CRISPRs, 8 questionable structures)
Xylella fastidiosa 9a5c
Xylella fastidiosa M12     (1 questionable structure)
Xylella fastidiosa M23     (1 questionable structure)
Xylella fastidiosa Temecula1     (1 questionable structure)
Yersinia enterocolitica subsp. enterocolitica 8081
Yersinia enterocolitica subsp. palearctica 105.5R(r)
Yersinia pestis A1122     (3 CRISPRs, 1 questionable structure)
Yersinia pestis Angola     (1 CRISPR)
Yersinia pestis Antiqua     (3 CRISPRs, 1 questionable structure)
Yersinia pestis biovar Microtus str. 91001     (2 CRISPRs)
Yersinia pestis CO92     (3 CRISPRs)
Yersinia pestis D106004     (3 CRISPRs)
Yersinia pestis D182038     (3 CRISPRs, 1 questionable structure)
Yersinia pestis KIM     (3 CRISPRs, 1 questionable structure)
Yersinia pestis Nepal516     (3 CRISPRs)
Yersinia pestis Pestoides F     (3 CRISPRs)
Yersinia pestis Z176003     (3 CRISPRs)
Yersinia pseudotuberculosis IP 31758     (2 CRISPRs)
Yersinia pseudotuberculosis IP 32953     (3 CRISPRs, 3 questionable structures)
Yersinia pseudotuberculosis PB1/+     (3 CRISPRs, 3 questionable structures)
Yersinia pseudotuberculosis YPIII     (3 CRISPRs)
Zobellia galactanivorans     (1 questionable structure)
Zunongwangia profunda SM-A87     (2 CRISPRs, 1 questionable structure)
Zymomonas mobilis subsp. mobilis NCIMB 11163     (4 CRISPRs)
Zymomonas mobilis subsp. mobilis ZM4     (3 CRISPRs)
Zymomonas mobilis subsp. pomaceae ATCC 29192     (4 CRISPRs)

Archea

Acidianus hospitalis W1     (6 CRISPRs, 3 questionable structures)
Acidilobus saccharovorans 345-15     (7 CRISPRs)
Aciduliprofundum boonei T469     (2 CRISPRs)
Aeropyrum pernix K1     (3 CRISPRs, 1 questionable structure)
Archaeoglobus fulgidus DSM 4304     (3 CRISPRs)
Archaeoglobus profundus DSM 5631
Archaeoglobus veneficus SNP6     (2 CRISPRs)
Candidatus Korarchaeum cryptofilum OPF8     (2 CRISPRs, 2 questionable structures)
Candidatus Methanoregula boonei 6A8
Candidatus Methanosphaerula palustris E1-9c     (2 CRISPRs, 4 questionable structures)
Candidatus Rickettsia amblyommii str. GAT-30V     (1 questionable structure)
Cenarchaeum symbiosum A
Dechlorosoma suillum PS
Desulfurococcus kamchatkensis 1221n     (2 CRISPRs)
Desulfurococcus mucosus DSM 2162     (4 CRISPRs)
Ferroglobus placidus DSM 10642     (6 CRISPRs, 1 questionable structure)
Halalkalicoccus jeotgali B3
Haloarcula hispanica ATCC 33960     (1 CRISPR)
Haloarcula marismortui ATCC 43049     (4 CRISPRs, 2 questionable structures)
Halobacterium salinarum R1     (1 questionable structure)
Halobacterium sp. NRC-1
Haloferax volcanii DS2     (3 CRISPRs, 3 questionable structures)
Halogeometricum borinquense DSM 11551     (1 CRISPR, 4 questionable structures)
Halomicrobium mukohataei DSM 12286     (2 CRISPRs, 5 questionable structures)
halophilic archaeon DL31     (2 CRISPRs, 2 questionable structures)
Halopiger xanaduensis SH-6     (1 questionable structure)
Haloquadratum walsbyi DSM 16790     (2 CRISPRs)
Halorhabdus utahensis DSM 12940     (1 CRISPR)
Halorubrum lacusprofundi ATCC 49239     (5 CRISPRs, 2 questionable structures)
Haloterrigena turkmenica DSM 5511     (7 questionable structures)
Hyperthermus butylicus DSM 5456     (2 CRISPRs)
Ignicoccus hospitalis KIN4/I     (12 CRISPRs)
Ignisphaera aggregans DSM 17230     (8 CRISPRs)
Metallosphaera cuprina Ar-4     (2 CRISPRs, 1 questionable structure)
Metallosphaera sedula DSM 5348     (4 CRISPRs)
Methanobacterium sp. AL-21     (1 CRISPR, 1 questionable structure)
Methanobacterium sp. SWAN-1     (1 CRISPR, 1 questionable structure)
Methanobrevibacter ruminantium M1     (3 CRISPRs, 22 questionable structures)
Methanobrevibacter smithii ATCC 35061     (1 CRISPR, 4 questionable structures)
Methanocaldococcus fervens AG86     (8 CRISPRs)
Methanocaldococcus infernus ME     (14 CRISPRs)
Methanocaldococcus jannaschii DSM 2661     (20 CRISPRs)
Methanocaldococcus sp. FS406-22     (23 CRISPRs, 2 questionable structures)
Methanocaldococcus vulcanius M7     (20 CRISPRs, 1 questionable structure)
Methanocella paludicola SANAE     (4 questionable structures)
Methanocella sp. HZ254     (1 CRISPR, 4 questionable structures)
Methanococcoides burtonii DSM 6242     (2 CRISPRs, 1 questionable structure)
Methanococcus aeolicus Nankai-3     (1 CRISPR, 1 questionable structure)
Methanococcus maripaludis C5     (1 CRISPR, 4 questionable structures)
Methanococcus maripaludis C6
Methanococcus maripaludis C7
Methanococcus maripaludis S2
Methanococcus maripaludis X1     (1 CRISPR, 1 questionable structure)
Methanococcus vannielii SB     (2 CRISPRs)
Methanococcus voltae A3     (3 CRISPRs, 2 questionable structures)
Methanocorpusculum labreanum Z     (1 CRISPR, 4 questionable structures)
Methanoculleus marisnigri JR1     (1 CRISPR, 1 questionable structure)
Methanohalobium evestigatum Z-7303     (1 questionable structure)
Methanohalophilus mahii DSM 5219
Methanoplanus petrolearius DSM 11571     (1 questionable structure)
Methanopyrus kandleri AV19     (5 CRISPRs)
Methanosaeta concilii GP-6     (6 CRISPRs)
Methanosaeta thermophila PT     (2 CRISPRs, 17 questionable structures)
Methanosalsum zhilinae DSM 4017     (1 CRISPR, 1 questionable structure)
Methanosarcina acetivorans C2A     (5 CRISPRs, 5 questionable structures)
Methanosarcina barkeri str. fusaro     (4 CRISPRs, 15 questionable structures)
Methanosarcina mazei Go1     (4 CRISPRs, 4 questionable structures)
Methanosphaera stadtmanae DSM 3091     (3 CRISPRs)
Methanospirillum hungatei JF-1     (7 CRISPRs)
Methanothermobacter marburgensis str. Marburg     (2 CRISPRs, 11 questionable structures)
Methanothermobacter thermautotrophicus str. Delta H     (2 CRISPRs, 12 questionable structures)
Methanothermococcus okinawensis IH1     (8 CRISPRs, 2 questionable structures)
Methanothermus fervidus DSM 2088
Methanotorris igneus Kol 5     (25 CRISPRs)
Nanoarchaeum equitans Kin4-M     (2 CRISPRs)
Natrialba magadii ATCC 43099     (2 CRISPRs, 3 questionable structures)
Natronomonas pharaonis DSM 2160     (4 CRISPRs, 1 questionable structure)
Nitrosopumilus maritimus SCM1     (1 CRISPR, 1 questionable structure)
Owenweeksia hongkongensis DSM 17368     (1 questionable structure)
Picrophilus torridus DSM 9790     (4 CRISPRs)
Pyrobaculum aerophilum str. IM2     (6 CRISPRs)
Pyrobaculum arsenaticum DSM 13514     (4 CRISPRs)
Pyrobaculum calidifontis JCM 11548     (7 CRISPRs)
Pyrobaculum islandicum DSM 4184     (5 CRISPRs)
Pyrobaculum oguniense TE7     (5 CRISPRs)
Pyrobaculum sp. 1860     (8 CRISPRs, 1 questionable structure)
Pyrococcus abyssi GE5     (4 CRISPRs)
Pyrococcus furiosus DSM 3638     (8 CRISPRs)
Pyrococcus horikoshii OT3     (6 CRISPRs)
Pyrococcus sp. NA2     (2 CRISPRs)
Pyrococcus yayanosii CH1     (7 CRISPRs)
Pyrolobus fumarii 1A     (7 CRISPRs)
Staphylothermus hellenicus DSM 12710     (6 CRISPRs, 2 questionable structures)
Staphylothermus marinus F1     (11 CRISPRs)
Sulfolobus acidocaldarius DSM 639     (4 CRISPRs)
Sulfolobus islandicus L.D.8.5     (4 CRISPRs, 2 questionable structures)
Sulfolobus islandicus L.S.2.15     (4 CRISPRs, 1 questionable structure)
Sulfolobus islandicus M.14.25     (3 CRISPRs, 2 questionable structures)
Sulfolobus islandicus M.16.27     (3 CRISPRs, 1 questionable structure)
Sulfolobus islandicus M.16.4     (2 CRISPRs, 1 questionable structure)
Sulfolobus islandicus Y.G.57.14     (2 CRISPRs, 1 questionable structure)
Sulfolobus islandicus Y.N.15.51     (2 CRISPRs, 1 questionable structure)
Sulfolobus solfataricus P2     (7 CRISPRs, 3 questionable structures)
Sulfolobus tokodaii str. 7     (5 CRISPRs, 3 questionable structures)
Thermococcus barophilus MP     (4 CRISPRs)
Thermococcus gammatolerans EJ3     (3 CRISPRs)
Thermococcus kodakarensis KOD1     (3 CRISPRs)
Thermococcus onnurineus NA1     (6 CRISPRs)
Thermococcus sibiricus MM 739     (1 CRISPR)
Thermococcus sp. 4557     (5 CRISPRs)
Thermococcus sp. AM4     (3 CRISPRs)
Thermofilum pendens Hrk 5     (10 CRISPRs)
Thermoplasma acidophilum DSM 1728     (1 CRISPR, 1 questionable structure)
Thermoplasma volcanium GSS1     (2 CRISPRs)
Thermoproteus neutrophilus V24Sta     (10 CRISPRs)
Thermoproteus tenax Kra 1     (7 CRISPRs)
Thermoproteus uzoniensis 768-20
Thermosphaera aggregans DSM 11486     (1 CRISPR)
uncultured methanogenic archaeon RC-I
Vulcanisaeta distributa DSM 14429     (9 CRISPRs)
Vulcanisaeta moutnovskia 768-28     (4 CRISPRs)