CRISPRs Database

*number of convincing CRISPR structures (number of genomes with such CRISPR)

	Genomes analysed	CRISPRs found	Strains with convincing CRISPR(s)	Strains devoid of detectable CRISPRs
Archea	67	261	61	6
Bacteria	928	1197	415	282
Total	995	1458	476	288

Click on strain name to get more information.

Bacteria

Acaryochloris marina MBIC11017 (1 CRISPR, 2 questionable structures)

Acetobacter pasteurianus IFO 3283-01 (1 CRISPR)

Acidaminococcus fermentans DSM 20731 (1 CRISPR, 3 questionable structures)

Acidimicrobium ferrooxidans DSM 10331 (2 CRISPRs)

Acidiphilium cryptum JF-5 (2 CRISPRs, 1 questionable structure)

Acidithiobacillus ferrooxidans ATCC 23270 (4 CRISPRs, 2 questionable structures)

Acidithiobacillus ferrooxidans ATCC 53993 (2 questionable structures)

Acidobacteria bacterium Ellin345 (4 questionable structures)

Acidobacterium capsulatum ATCC 51196 (1 CRISPR)

Acidothermus cellulolyticus 11B (1 CRISPR, 7 questionable structures)

Acidovorax avenae subsp. citrulli AAC00-1

Acidovorax sp. JS42 (2 CRISPRs, 2 questionable structures)

Acinetobacter baumannii AB0057 (1 CRISPR, 2 questionable structures)

Acinetobacter baumannii AB307-0294 (1 CRISPR, 3 questionable structures)

Acinetobacter baumannii ACICU

Acinetobacter baumannii ATCC 17978 (1 questionable structure)

Acinetobacter baumannii AYE (1 CRISPR, 3 questionable structures)

Acinetobacter baumannii SDF (1 questionable structure)

Acinetobacter sp. ADP1 (3 CRISPRs)

Actinobacillus pleuropneumoniae L20 (1 CRISPR)

Actinobacillus pleuropneumoniae serovar 3 str. JL03 (1 CRISPR)

Actinobacillus pleuropneumoniae serovar 7 str. AP76 (1 CRISPR)

Actinobacillus succinogenes 130Z (2 CRISPRs)

Actinosynnema mirum DSM 43827 (3 questionable structures)

Aeromonas hydrophila subsp. hydrophila ATCC 7966 (9 questionable structures)

Aeromonas salmonicida subsp. salmonicida (2 questionable structures)

Aggregatibacter actinomycetemcomitans D11S-1

Aggregatibacter aphrophilus NJ8700 (1 CRISPR)

Agrobacterium radiobacter K84

Agrobacterium tumefaciens str. C58

Agrobacterium vitis S4 (1 questionable structure)

Akkermansia muciniphila ATCC BAA-835 (2 CRISPRs)

Alcanivorax borkumensis SK2

Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 (4 CRISPRs)

Alkalilimnicola ehrlichei MLHE-1 (1 CRISPR, 3 questionable structures)

Alkaliphilus metalliredigens QYMF (2 CRISPRs, 2 questionable structures)

Alkaliphilus oremlandii OhILAs (1 questionable structure)

Alteromonas macleodii 'Deep ecotype' (1 CRISPR, 2 questionable structures)

Ammonifex degensii KC4 (8 CRISPRs, 2 questionable structures)

Anabaena variabilis ATCC 29413 (11 CRISPRs, 4 questionable structures)

Anaerocellum thermophilum DSM 6725 (9 CRISPRs)

Anaerococcus prevotii DSM 20548

Anaeromyxobacter dehalogenans 2CP-1 (2 CRISPRs, 3 questionable structures)

Anaeromyxobacter dehalogenans 2CP-C (5 questionable structures)

Anaeromyxobacter sp. Fw109-5 (1 questionable structure)

Anaeromyxobacter sp. K (2 CRISPRs, 4 questionable structures)

Anaplasma centrale str. Israel (1 questionable structure)

Anaplasma marginale str. Florida

Anaplasma marginale str. St. Maries

Anaplasma phagocytophilum HZ (1 questionable structure)

Anoxybacillus flavithermus WK1 (3 CRISPRs)

Aquifex aeolicus VF5 (11 CRISPRs)

Arcobacter butzleri RM4018

Arthrobacter aurescens TC1 (7 questionable structures)

Arthrobacter chlorophenolicus A6 (2 questionable structures)

Arthrobacter sp. FB24 (2 questionable structures)

Aster yellows witches'-broom phytoplasma AYWB

Atopobium parvulum DSM 20469

Azoarcus sp. BH72 (3 questionable structures)

Azoarcus sp. EbN1 (5 CRISPRs)

Azorhizobium caulinodans ORS 571

Azotobacter vinelandii DJ (2 CRISPRs, 1 questionable structure)

Bacillus amyloliquefaciens FZB42

Bacillus anthracis str. 'Ames Ancestor' (2 questionable structures)

Bacillus anthracis str. A0248 (3 questionable structures)

Bacillus anthracis str. Ames (2 questionable structures)

Bacillus anthracis str. CDC 684 (1 questionable structure)

Bacillus anthracis str. Sterne (2 questionable structures)

Bacillus cereus 03BB102 (1 questionable structure)

Bacillus cereus AH187

Bacillus cereus AH820 (1 questionable structure)

Bacillus cereus ATCC 10987 (1 questionable structure)

Bacillus cereus ATCC 14579 (1 questionable structure)

Bacillus cereus B4264 (1 questionable structure)

Bacillus cereus E33L (1 questionable structure)

Bacillus cereus G9842 (2 questionable structures)

Bacillus cereus Q1

Bacillus cereus subsp. cytotoxis NVH 391-98 (2 CRISPRs, 1 questionable structure)

Bacillus clausii KSM-K16 (8 CRISPRs, 1 questionable structure)

Bacillus halodurans C-125 (5 CRISPRs)

Bacillus licheniformis ATCC 14580

Bacillus pumilus SAFR-032

Bacillus subtilis subsp. subtilis str. 168

Bacillus thuringiensis serovar konkukian str. 97-27 (1 questionable structure)

Bacillus thuringiensis str. Al Hakam (5 questionable structures)

Bacillus weihenstephanensis KBAB4 (2 questionable structures)

Bacteroides fragilis NCTC 9343 (2 CRISPRs, 2 questionable structures)

Bacteroides fragilis YCH46 (1 CRISPR)

Bacteroides thetaiotaomicron VPI-5482 (1 questionable structure)

Bacteroides vulgatus ATCC 8482

Bartonella bacilliformis KC583

Bartonella grahamii as4aup (1 questionable structure)

Bartonella henselae str. Houston-1

Bartonella quintana str. Toulouse

Bartonella tribocorum CIP 105476 (1 questionable structure)

Baumannia cicadellinicola str. Hc (Homalodisca coagulata)

Bdellovibrio bacteriovorus HD100

Beijerinckia indica subsp. indica ATCC 9039

Beutenbergia cavernae DSM 12333

Bifidobacterium adolescentis ATCC 15703 (2 CRISPRs, 3 questionable structures)

Bifidobacterium animalis subsp. lactis AD011 (1 CRISPR, 3 questionable structures)

Bifidobacterium animalis subsp. lactis Bl-04 (1 CRISPR, 1 questionable structure)

Bifidobacterium animalis subsp. lactis DSM 10140 (1 CRISPR, 2 questionable structures)

Bifidobacterium dentium Bd1 (2 CRISPRs, 7 questionable structures)

Bifidobacterium longum DJO10A (1 CRISPR, 1 questionable structure)

Bifidobacterium longum NCC2705 (1 questionable structure)

Bifidobacterium longum subsp. infantis ATCC 15697 (1 questionable structure)

Blattabacterium sp. (Blattella germanica) str. Bge

Blattabacterium sp. (Periplaneta americana) str. BPLAN

Bordetella avium 197N

Bordetella bronchiseptica RB50 (2 questionable structures)

Bordetella parapertussis 12822 (2 questionable structures)

Bordetella pertussis Tohama I (1 questionable structure)

Bordetella petrii DSM 12804

Borrelia afzelii PKo

Borrelia burgdorferi B31

Borrelia burgdorferi ZS7

Borrelia duttonii Ly

Borrelia garinii PBi

Borrelia hermsii DAH

Borrelia recurrentis A1

Borrelia turicatae 91E135

Brachybacterium faecium DSM 4810 (1 questionable structure)

Brachyspira hyodysenteriae WA1 (2 questionable structures)

Bradyrhizobium japonicum USDA 110

Bradyrhizobium sp. BTAi1 (1 questionable structure)

Bradyrhizobium sp. ORS278 (1 questionable structure)

Brevibacillus brevis NBRC 100599

Brucella abortus biovar 1 str. 9-941

Brucella abortus S19

Brucella canis ATCC 23365

Brucella melitensis 16M (1 questionable structure)

Brucella melitensis ATCC 23457 (1 questionable structure)

Brucella melitensis biovar Abortus 2308

Brucella microti CCM 4915 (1 questionable structure)

Brucella ovis ATCC 25840

Brucella suis 1330

Brucella suis ATCC 23445

Buchnera aphidicola (Cinara cedri)

Buchnera aphidicola str. 5A (Acyrthosiphon pisum)

Buchnera aphidicola str. APS (Acyrthosiphon pisum)

Buchnera aphidicola str. Bp (Baizongia pistaciae)

Buchnera aphidicola str. Cc (Cinara cedri)

Buchnera aphidicola str. Sg (Schizaphis graminum)

Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)

Burkholderia ambifaria MC40-6 (3 questionable structures)

Burkholderia cenocepacia AU 1054

Burkholderia cenocepacia HI2424

Burkholderia cenocepacia J2315

Burkholderia cenocepacia MC0-3

Burkholderia cepacia AMMD (3 questionable structures)

Burkholderia glumae BGR1 (1 questionable structure)

Burkholderia mallei ATCC 23344

Burkholderia mallei NCTC 10229

Burkholderia mallei NCTC 10247

Burkholderia mallei SAVP1

Burkholderia multivorans ATCC 17616

Burkholderia phymatum STM815

Burkholderia phytofirmans PsJN (1 questionable structure)

Burkholderia pseudomallei 1106a (1 questionable structure)

Burkholderia pseudomallei 1710b (1 questionable structure)

Burkholderia pseudomallei 668

Burkholderia pseudomallei K96243 (3 questionable structures)

Burkholderia pseudomallei MSHR346

Burkholderia sp. 383 (2 questionable structures)

Burkholderia thailandensis E264

Burkholderia vietnamiensis G4

Burkholderia xenovorans LB400 (4 questionable structures)

Caldicellulosiruptor saccharolyticus DSM 8903 (13 CRISPRs)

Campylobacter concisus 13826 (1 questionable structure)

Campylobacter curvus 525.92 (2 CRISPRs, 1 questionable structure)

Campylobacter fetus subsp. fetus 82-40 (2 CRISPRs)

Campylobacter hominis ATCC BAA-381 (1 CRISPR)

Campylobacter jejuni RM1221 (1 CRISPR, 1 questionable structure)

Campylobacter jejuni subsp. doylei 269.97 (1 CRISPR, 1 questionable structure)

Campylobacter jejuni subsp. jejuni 81-176

Campylobacter jejuni subsp. jejuni 81116 (1 CRISPR, 1 questionable structure)

Campylobacter jejuni subsp. jejuni NCTC 11168 (1 CRISPR, 1 questionable structure)

Campylobacter lari RM2100

Candidatus Accumulibacter phosphatis clade IIA str. UW-1 (2 CRISPRs)

Candidatus Amoebophilus asiaticus 5a2 (4 questionable structures)

Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2

Candidatus Blochmannia floridanus

Candidatus Blochmannia pennsylvanicus str. BPEN

Candidatus Carsonella ruddii PV

Candidatus Desulfococcus oleovorans Hxd3 (2 CRISPRs, 4 questionable structures)

Candidatus Desulforudis audaxviator MP104C (4 CRISPRs, 2 questionable structures)

Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) (1 questionable structure)

Candidatus Hodgkinia cicadicola Dsem

Candidatus Liberibacter asiaticus str. psy62

Candidatus Pelagibacter ubique HTCC1062

Candidatus Phytoplasma australiense (1 questionable structure)

Candidatus Phytoplasma mali

Candidatus Protochlamydia amoebophila UWE25 (1 questionable structure)

Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)

Candidatus Sulcia muelleri GWSS (1 questionable structure)

Candidatus Sulcia muelleri SMDSEM

Candidatus Vesicomyosocius okutanii HA

Capnocytophaga ochracea DSM 7271 (1 CRISPR, 5 questionable structures)

Carboxydothermus hydrogenoformans Z-2901 (2 CRISPRs, 1 questionable structure)

Catenulispora acidiphila DSM 44928 (6 CRISPRs, 4 questionable structures)

Caulobacter crescentus CB15 (1 questionable structure)

Caulobacter crescentus NA1000

Caulobacter sp. K31 (1 questionable structure)

Cellvibrio japonicus Ueda107 (1 CRISPR, 1 questionable structure)

Chitinophaga pinensis DSM 2588 (2 questionable structures)

Chlamydia muridarum Nigg

Chlamydia trachomatis 434/Bu

Chlamydia trachomatis A/HAR-13

Chlamydia trachomatis B/Jali20/OT

Chlamydia trachomatis B/TZ1A828/OT

Chlamydia trachomatis D/UW-3/CX

Chlamydia trachomatis L2b/UCH-1/proctitis

Chlamydophila abortus S26/3

Chlamydophila caviae GPIC

Chlamydophila felis Fe/C-56

Chlamydophila pneumoniae AR39

Chlamydophila pneumoniae CWL029

Chlamydophila pneumoniae J138

Chlamydophila pneumoniae TW-183

Chlorobaculum parvum NCIB 8327 (1 CRISPR, 2 questionable structures)

Chlorobium chlorochromatii CaD3 (2 CRISPRs)

Chlorobium limicola DSM 245 (4 CRISPRs, 3 questionable structures)

Chlorobium phaeobacteroides BS1 (4 CRISPRs, 2 questionable structures)

Chlorobium phaeobacteroides DSM 266 (5 CRISPRs, 1 questionable structure)

Chlorobium tepidum TLS (2 CRISPRs, 2 questionable structures)

Chloroflexus aggregans DSM 9485 (7 CRISPRs, 21 questionable structures)

Chloroflexus aurantiacus J-10-fl (3 CRISPRs, 5 questionable structures)

Chloroflexus sp. Y-400-fl (4 CRISPRs, 5 questionable structures)

Chloroherpeton thalassium ATCC 35110 (2 CRISPRs, 3 questionable structures)

Chromobacterium violaceum ATCC 12472 (4 CRISPRs)

Chromohalobacter salexigens DSM 3043 (2 CRISPRs)

Citrobacter koseri ATCC BAA-895 (1 CRISPR, 5 questionable structures)

Citrobacter rodentium ICC168 (2 CRISPRs, 16 questionable structures)

Clavibacter michiganensis subsp. michiganensis NCPPB 382 (1 questionable structure)

Clavibacter michiganensis subsp. sepedonicus

Clostridium acetobutylicum ATCC 824 (2 questionable structures)

Clostridium beijerinckii NCIMB 8052 (2 questionable structures)

Clostridium botulinum A str. ATCC 3502 (8 CRISPRs)

Clostridium botulinum A2 str. Kyoto (6 CRISPRs)

Clostridium botulinum A3 str. Loch Maree (5 CRISPRs, 2 questionable structures)

Clostridium botulinum B str. Eklund 17B (1 CRISPR)

Clostridium botulinum B1 str. Okra (9 CRISPRs)

Clostridium botulinum Ba4 str. 657 (7 CRISPRs)

Clostridium botulinum E3 str. Alaska E43 (3 CRISPRs, 1 questionable structure)

Clostridium botulinum F str. Langeland (12 CRISPRs, 1 questionable structure)

Clostridium cellulolyticum H10 (3 CRISPRs)

Clostridium difficile 630 (12 CRISPRs, 3 questionable structures)

Clostridium difficile CD196 (9 CRISPRs, 9 questionable structures)

Clostridium difficile R20291 (9 CRISPRs, 9 questionable structures)

Clostridium kluyveri DSM 555 (5 CRISPRs)

Clostridium kluyveri NBRC 12016 (5 CRISPRs)

Clostridium novyi NT (2 CRISPRs, 2 questionable structures)

Clostridium perfringens ATCC 13124 (2 CRISPRs)

Clostridium perfringens SM101 (2 CRISPRs)

Clostridium perfringens str. 13 (2 questionable structures)

Clostridium phytofermentans ISDg (3 questionable structures)

Clostridium tetani E88 (8 CRISPRs)

Clostridium thermocellum ATCC 27405 (5 CRISPRs)

Colwellia psychrerythraea 34H (1 questionable structure)

Comamonas testosteroni CNB-2 (2 questionable structures)

Conexibacter woesei DSM 14684 (3 questionable structures)

Coprothermobacter proteolyticus DSM 5265 (1 CRISPR, 2 questionable structures)

Corynebacterium aurimucosum

Corynebacterium aurimucosum ATCC 700975 (1 CRISPR)

Corynebacterium diphtheriae NCTC 13129 (2 CRISPRs)

Corynebacterium efficiens YS-314 (1 CRISPR, 1 questionable structure)

Corynebacterium glutamicum ATCC 13032 (2 questionable structures)

Corynebacterium glutamicum R (1 CRISPR)

Corynebacterium jeikeium K411 (1 CRISPR, 1 questionable structure)

Corynebacterium kroppenstedtii DSM 44385

Corynebacterium urealyticum DSM 7109 (2 CRISPRs, 1 questionable structure)

Coxiella burnetii CbuG_Q212

Coxiella burnetii CbuK_Q154 (1 questionable structure)

Coxiella burnetii Dugway 5J108-111

Coxiella burnetii RSA 493

Cronobacter turicensis (2 CRISPRs, 6 questionable structures)

Cryptobacterium curtum DSM 15641 (1 questionable structure)

Cupriavidus taiwanensis (1 questionable structure)

Cyanothece sp. ATCC 51142 (5 CRISPRs, 2 questionable structures)

Cyanothece sp. PCC 7424 (14 CRISPRs, 9 questionable structures)

Cyanothece sp. PCC 7425 (5 CRISPRs)

Cyanothece sp. PCC 8801 (6 CRISPRs, 5 questionable structures)

Cyanothece sp. PCC 8802 (7 CRISPRs, 5 questionable structures)

Cytophaga hutchinsonii ATCC 33406

Dechloromonas aromatica RCB

Dehalococcoides ethenogenes 195

Dehalococcoides sp. BAV1 (1 CRISPR)

Dehalococcoides sp. CBDB1 (1 CRISPR)

Dehalococcoides sp. VS

Deinococcus deserti VCD115

Deinococcus geothermalis DSM 11300 (6 CRISPRs)

Deinococcus radiodurans R1 (1 questionable structure)

Desulfatibacillum alkenivorans AK-01 (1 CRISPR)

Desulfitobacterium hafniense DCB-2 (5 CRISPRs, 1 questionable structure)

Desulfitobacterium hafniense Y51 (6 CRISPRs, 1 questionable structure)

Desulfobacterium autotrophicum HRM2 (1 CRISPR, 1 questionable structure)

Desulfohalobium retbaense DSM 5692 (1 CRISPR)

Desulfomicrobium baculatum DSM 4028 (2 questionable structures)

Desulfotalea psychrophila LSv54 (1 CRISPR, 3 questionable structures)

Desulfotomaculum acetoxidans DSM 771 (11 CRISPRs, 1 questionable structure)

Desulfotomaculum reducens MI-1 (5 CRISPRs)

Desulfovibrio desulfuricans G20 (1 CRISPR)

Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 (2 CRISPRs)

Desulfovibrio salexigens DSM 2638

Desulfovibrio vulgaris str. 'Miyazaki F' (1 CRISPR, 1 questionable structure)

Desulfovibrio vulgaris subsp. vulgaris DP4 (1 CRISPR, 1 questionable structure)

Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough (1 CRISPR, 1 questionable structure)

Diaphorobacter sp. TPSY (1 CRISPR)

Dichelobacter nodosus VCS1703A (1 CRISPR, 1 questionable structure)

Dickeya dadantii Ech586

Dickeya dadantii Ech703 (4 CRISPRs)

Dickeya zeae Ech1591 (4 CRISPRs, 2 questionable structures)

Dictyoglomus thermophilum H-6-12 (3 CRISPRs)

Dictyoglomus turgidum DSM 6724 (2 CRISPRs, 1 questionable structure)

Dyadobacter fermentans DSM 18053 (4 questionable structures)

Edwardsiella ictaluri 93-146

Edwardsiella tarda EIB202 (1 questionable structure)

Eggerthella lenta DSM 2243 (2 CRISPRs)

Ehrlichia canis str. Jake

Ehrlichia chaffeensis str. Arkansas

Ehrlichia ruminantium str. Gardel

Ehrlichia ruminantium str. Welgevonden

Elusimicrobium minutum Pei191 (1 CRISPR)

Enterobacter sakazakii ATCC BAA-894 (3 CRISPRs, 6 questionable structures)

Enterobacter sp. 638 (2 CRISPRs, 6 questionable structures)

Enterococcus faecalis V583 (2 questionable structures)

Erwinia carotovora subsp. atroseptica SCRI1043 (3 CRISPRs, 1 questionable structure)

Erwinia pyrifoliae Ep1/96 (4 CRISPRs, 4 questionable structures)

Erwinia tasmaniensis Et1/99 (2 CRISPRs)

Erythrobacter litoralis HTCC2594 (1 questionable structure)

Escherichia coli 536 (1 CRISPR, 5 questionable structures)

Escherichia coli 55989 (2 CRISPRs)

Escherichia coli APEC O1 (2 CRISPRs, 3 questionable structures)

Escherichia coli B str. REL606 (2 CRISPRs, 3 questionable structures)

Escherichia coli BL21(DE3) (2 CRISPRs, 2 questionable structures)

Escherichia coli BW2952 (2 CRISPRs, 2 questionable structures)

Escherichia coli C str. ATCC 8739 (4 CRISPRs, 2 questionable structures)

Escherichia coli CFT073 (2 questionable structures)

Escherichia coli E24377A (3 CRISPRs)

Escherichia coli ED1a (2 CRISPRs, 3 questionable structures)

Escherichia coli HS (3 CRISPRs, 2 questionable structures)

Escherichia coli IAI1 (3 CRISPRs, 1 questionable structure)

Escherichia coli IAI39 (1 CRISPR)

Escherichia coli LF82 (2 CRISPRs, 2 questionable structures)

Escherichia coli O103:H2 str. 12009 (2 CRISPRs, 2 questionable structures)

Escherichia coli O111:H- str. 11128 (2 CRISPRs, 1 questionable structure)

Escherichia coli O127:H6 str. E2348/69 (2 questionable structures)

Escherichia coli O157:H7 (2 CRISPRs)

Escherichia coli O157:H7 str. EC4115 (2 CRISPRs)

Escherichia coli O157:H7 str. Sakai (2 CRISPRs)

Escherichia coli O157:H7 str. TW14359 (2 CRISPRs)

Escherichia coli O26:H11 str. 11368 (2 CRISPRs, 1 questionable structure)

Escherichia coli S88 (2 CRISPRs, 2 questionable structures)

Escherichia coli SE11 (2 CRISPRs, 1 questionable structure)

Escherichia coli SECEC SMS-3-5 (1 CRISPR)

Escherichia coli str. K-12 substr. DH10B (2 CRISPRs, 2 questionable structures)

Escherichia coli str. K-12 substr. MG1655 (2 CRISPRs, 2 questionable structures)

Escherichia coli str. K-12 substr. W3110

Escherichia coli UMN026 (3 CRISPRs, 5 questionable structures)

Escherichia coli UTI89 (2 CRISPRs, 3 questionable structures)

Escherichia fergusonii ATCC 35469 (3 CRISPRs, 1 questionable structure)

Eubacterium eligens ATCC 27750 (1 CRISPR, 1 questionable structure)

Eubacterium rectale ATCC 33656 (2 CRISPRs)

Exiguobacterium sibiricum 255-15 (1 CRISPR)

Exiguobacterium sp. AT1b

Fervidobacterium nodosum Rt17-B1 (2 CRISPRs)

Fibrobacter succinogenes subsp. succinogenes S85 (6 CRISPRs, 8 questionable structures)

Finegoldia magna ATCC 29328 (4 CRISPRs)

Flavobacteriaceae bacterium 3519-10 (1 questionable structure)

Flavobacterium johnsoniae UW101

Flavobacterium psychrophilum JIP02/86 (1 CRISPR, 2 questionable structures)

Francisella philomiragia subsp. philomiragia ATCC 25017 (1 CRISPR)

Francisella tularensis subsp. holarctica

Francisella tularensis subsp. holarctica FTA

Francisella tularensis subsp. holarctica OSU18

Francisella tularensis subsp. mediasiatica FSC147

Francisella tularensis subsp. novicida U112 (2 CRISPRs, 2 questionable structures)

Francisella tularensis subsp. tularensis FSC 198

Francisella tularensis subsp. tularensis SCHU S4

Francisella tularensis subsp. tularensis WY96-3418

Frankia alni ACN14a (7 CRISPRs, 4 questionable structures)

Frankia sp. CcI3 (4 CRISPRs, 3 questionable structures)

Frankia sp. EAN1pec (5 CRISPRs, 1 questionable structure)

Fusobacterium nucleatum subsp. nucleatum ATCC 25586 (1 CRISPR)

Gardnerella vaginalis 409-05 (1 CRISPR, 3 questionable structures)

Gemmatimonas aurantiaca T-27

Geobacillus kaustophilus HTA426 (4 CRISPRs, 1 questionable structure)

Geobacillus sp. Y412MC10 (1 questionable structure)

Geobacillus sp. Y412MC61 (6 CRISPRs, 3 questionable structures)

Geobacillus thermodenitrificans NG80-2 (3 CRISPRs, 1 questionable structure)

Geobacter bemidjiensis Bem (6 questionable structures)

Geobacter lovleyi SZ (1 CRISPR)

Geobacter metallireducens GS-15 (1 CRISPR, 1 questionable structure)

Geobacter sp. FRC-32 (1 CRISPR)

Geobacter sp. M21 (4 questionable structures)

Geobacter sulfurreducens PCA (2 CRISPRs)

Geobacter uraniumreducens Rf4 (2 CRISPRs, 3 questionable structures)

Gloeobacter violaceus PCC 7421 (1 questionable structure)

Gluconacetobacter diazotrophicus PAl 5 (7 CRISPRs)

Gluconobacter oxydans 621H

Gordonia bronchialis DSM 43247 (3 questionable structures)

Gramella forsetii KT0803

Granulibacter bethesdensis CGDNIH1 (4 CRISPRs)

Haemophilus ducreyi 35000HP

Haemophilus influenzae 86-028NP (1 questionable structure)

Haemophilus influenzae PittEE (1 questionable structure)

Haemophilus influenzae PittGG

Haemophilus influenzae Rd KW20 (1 questionable structure)

Haemophilus parasuis SH0165 (2 questionable structures)

Haemophilus somnus 129PT

Haemophilus somnus 2336

Hahella chejuensis KCTC 2396 (2 CRISPRs, 1 questionable structure)

Haliangium ochraceum DSM 14365 (3 CRISPRs, 14 questionable structures)

Halorhodospira halophila SL1 (2 CRISPRs, 1 questionable structure)

Halothermothrix orenii H 168 (1 CRISPR)

Halothiobacillus neapolitanus c2 (1 CRISPR)

Helicobacter acinonychis str. Sheeba

Helicobacter hepaticus ATCC 51449

Helicobacter pylori 26695 (1 questionable structure)

Helicobacter pylori B38 (1 questionable structure)

Helicobacter pylori G27 (2 questionable structures)

Helicobacter pylori HPAG1 (1 questionable structure)

Helicobacter pylori J99

Helicobacter pylori P12

Helicobacter pylori Shi470

Heliobacterium modesticaldum Ice1 (3 CRISPRs)

Herminiimonas arsenicoxydans

Hirschia baltica ATCC 49814 (1 questionable structure)

Hydrogenobaculum sp. Y04AAS1 (1 CRISPR, 1 questionable structure)

Hyphomonas neptunium ATCC 15444

Idiomarina loihiensis L2TR

Jannaschia sp. CCS1

Janthinobacterium sp. Marseille

Jonesia denitrificans DSM 20603 (2 questionable structures)

Kangiella koreensis DSM 16069

Kineococcus radiotolerans SRS30216

Klebsiella pneumoniae 342 (1 CRISPR, 1 questionable structure)

Klebsiella pneumoniae NTUH-K2044 (2 CRISPRs, 2 questionable structures)

Klebsiella pneumoniae subsp. pneumoniae MGH 78578

Kocuria rhizophila DC2201

Kribbella flavida DSM 17836 (8 questionable structures)

Kytococcus sedentarius DSM 20547 (1 questionable structure)

Lactobacillus acidophilus NCFM (1 CRISPR)

Lactobacillus brevis ATCC 367 (2 CRISPRs)

Lactobacillus casei ATCC 334 (1 CRISPR, 2 questionable structures)

Lactobacillus casei BL23 (1 CRISPR)

Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 (1 CRISPR, 2 questionable structures)

Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 (1 CRISPR, 1 questionable structure)

Lactobacillus fermentum IFO 3956 (2 CRISPRs, 2 questionable structures)

Lactobacillus gasseri ATCC 33323

Lactobacillus johnsonii FI9785 (1 questionable structure)

Lactobacillus johnsonii NCC 533 (1 questionable structure)

Lactobacillus plantarum JDM1

Lactobacillus plantarum WCFS1

Lactobacillus reuteri DSM 20016

Lactobacillus reuteri JCM 1112

Lactobacillus rhamnosus GG (1 CRISPR, 1 questionable structure)

Lactobacillus rhamnosus Lc 705 (1 questionable structure)

Lactobacillus sakei subsp. sakei 23K

Lactobacillus salivarius subsp. salivarius (1 CRISPR, 1 questionable structure)

Lactococcus lactis subsp. cremoris MG1363

Lactococcus lactis subsp. cremoris SK11

Lactococcus lactis subsp. lactis Il1403

Lactococcus lactis subsp. lactis KF147 (2 questionable structures)

Laribacter hongkongensis HLHK9

Lawsonia intracellularis PHE/MN1-00 (1 questionable structure)

Legionella pneumophila str. Corby (2 questionable structures)

Legionella pneumophila str. Lens (3 CRISPRs)

Legionella pneumophila str. Paris (1 CRISPR)

Legionella pneumophila subsp. pneumophila str. Philadelphia 1

Leifsonia xyli subsp. xyli str. CTCB07

Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' (1 questionable structure)

Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' (1 questionable structure)

Leptospira borgpetersenii serovar Hardjo-bovis JB197 (1 questionable structure)

Leptospira borgpetersenii serovar Hardjo-bovis L550 (1 questionable structure)

Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 (1 CRISPR, 5 questionable structures)

Leptospira interrogans serovar Lai str. 56601 (1 questionable structure)

Leptothrix cholodnii SP-6 (1 CRISPR)

Leptotrichia buccalis DSM 1135 (4 CRISPRs, 1 questionable structure)

Leuconostoc citreum KM20

Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 (1 questionable structure)

Listeria innocua Clip11262 (1 CRISPR, 1 questionable structure)

Listeria monocytogenes Clip81459

Listeria monocytogenes EGD-e (1 CRISPR, 3 questionable structures)

Listeria monocytogenes HCC23 (2 CRISPRs)

Listeria monocytogenes str. 4b F2365

Listeria welshimeri serovar 6b str. SLCC5334

Lysinibacillus sphaericus C3-41 (1 CRISPR, 1 questionable structure)

Macrococcus caseolyticus JCSC5402 (2 questionable structures)

Magnetococcus sp. MC-1 (1 CRISPR, 1 questionable structure)

Magnetospirillum magneticum AMB-1

Mannheimia succiniciproducens MBEL55E (3 CRISPRs)

Maricaulis maris MCS10

Marinobacter aquaeolei VT8

Marinomonas sp. MWYL1 (2 CRISPRs)

Mesoplasma florum L1 (1 questionable structure)

Mesorhizobium loti MAFF303099

Mesorhizobium sp. BNC1

Methylacidiphilum infernorum V4 (5 CRISPRs)

Methylibium petroleiphilum PM1 (2 questionable structures)

Methylobacillus flagellatus KT (2 CRISPRs)

Methylobacterium chloromethanicum CM4

Methylobacterium extorquens AM1 (2 questionable structures)

Methylobacterium extorquens DM4 (2 questionable structures)

Methylobacterium extorquens PA1 (2 questionable structures)

Methylobacterium nodulans ORS 2060 (4 CRISPRs, 4 questionable structures)

Methylobacterium populi BJ001

Methylobacterium radiotolerans JCM 2831

Methylobacterium sp. 4-46 (3 CRISPRs, 10 questionable structures)

Methylocella silvestris BL2 (1 questionable structure)

Methylococcus capsulatus str. Bath (2 CRISPRs)

Methylotenera mobilis JLW8

Methylovorus sp. SIP3-4

Micrococcus luteus NCTC 2665

Microcystis aeruginosa NIES-843 (3 CRISPRs, 18 questionable structures)

Moorella thermoacetica ATCC 39073 (2 CRISPRs, 1 questionable structure)

Mycobacterium abscessus

Mycobacterium avium 104 (1 CRISPR, 6 questionable structures)

Mycobacterium avium subsp. paratuberculosis K-10 (1 questionable structure)

Mycobacterium bovis AF2122/97 (2 CRISPRs, 1 questionable structure)

Mycobacterium bovis BCG str. Pasteur 1173P2 (2 CRISPRs, 3 questionable structures)

Mycobacterium bovis BCG str. Tokyo 172 (2 CRISPRs, 1 questionable structure)

Mycobacterium gilvum PYR-GCK (1 questionable structure)

Mycobacterium leprae Br4923

Mycobacterium leprae TN

Mycobacterium marinum M (5 questionable structures)

Mycobacterium smegmatis str. MC2 155

Mycobacterium sp. JLS (3 questionable structures)

Mycobacterium sp. KMS (4 questionable structures)

Mycobacterium sp. MCS (2 questionable structures)

Mycobacterium tuberculosis CDC1551 (2 CRISPRs, 1 questionable structure)

Mycobacterium tuberculosis F11 (2 CRISPRs, 1 questionable structure)

Mycobacterium tuberculosis H37Ra (2 CRISPRs, 1 questionable structure)

Mycobacterium tuberculosis H37Rv (2 CRISPRs, 1 questionable structure)

Mycobacterium tuberculosis KZN 1435 (2 CRISPRs, 2 questionable structures)

Mycobacterium ulcerans (1 questionable structure)

Mycobacterium vanbaalenii PYR-1 (5 questionable structures)

Mycoplasma agalactiae PG2

Mycoplasma arthritidis 158L3-1 (1 CRISPR)

Mycoplasma capricolum subsp. capricolum ATCC 27343 (1 questionable structure)

Mycoplasma conjunctivae

Mycoplasma gallisepticum R (2 CRISPRs, 2 questionable structures)

Mycoplasma genitalium G37

Mycoplasma hominis (2 questionable structures)

Mycoplasma hyopneumoniae 232 (1 questionable structure)

Mycoplasma hyopneumoniae 7448

Mycoplasma hyopneumoniae J (1 questionable structure)

Mycoplasma mobile 163K (1 CRISPR)

Mycoplasma mycoides subsp. mycoides SC str. PG1

Mycoplasma penetrans HF-2 (1 questionable structure)

Mycoplasma pneumoniae M129 (2 questionable structures)

Mycoplasma pulmonis UAB CTIP

Mycoplasma synoviae 53 (1 CRISPR)

Myxococcus xanthus DK 1622 (4 CRISPRs, 4 questionable structures)

Nakamurella multipartita DSM 44233 (7 CRISPRs, 1 questionable structure)

Natranaerobius thermophilus JW/NM-WN-LF

Nautilia profundicola AmH

Neisseria gonorrhoeae FA 1090 (3 CRISPRs, 1 questionable structure)

Neisseria gonorrhoeae NCCP11945 (8 CRISPRs, 1 questionable structure)

Neisseria meningitidis alpha14 (6 CRISPRs, 3 questionable structures)

Neisseria meningitidis FAM18 (2 CRISPRs, 4 questionable structures)

Neisseria meningitidis MC58 (2 CRISPRs, 5 questionable structures)

Neisseria meningitidis Z2491 (2 CRISPRs, 4 questionable structures)

Neorickettsia risticii str. Illinois

Neorickettsia sennetsu str. Miyayama (1 questionable structure)

Nitratiruptor sp. SB155-2

Nitrobacter hamburgensis X14 (1 questionable structure)

Nitrobacter winogradskyi Nb-255 (1 CRISPR, 2 questionable structures)

Nitrosococcus oceani ATCC 19707 (1 CRISPR)

Nitrosomonas europaea ATCC 19718 (2 CRISPRs, 1 questionable structure)

Nitrosomonas eutropha C91 (3 CRISPRs)

Nitrosospira multiformis ATCC 25196

Nocardia farcinica IFM 10152 (3 CRISPRs, 5 questionable structures)

Nocardioides sp. JS614 (34 questionable structures)

Nostoc punctiforme PCC 73102 (6 CRISPRs, 13 questionable structures)

Nostoc sp. PCC 7120 (13 CRISPRs, 5 questionable structures)

Novosphingobium aromaticivorans DSM 12444

Oceanobacillus iheyensis HTE831 (3 questionable structures)

Ochrobactrum anthropi ATCC 49188 (1 questionable structure)

Oenococcus oeni PSU-1

Oligotropha carboxidovorans OM5

Onion yellows phytoplasma OY-M

Opitutus terrae PB90-1 (1 questionable structure)

Orientia tsutsugamushi Boryong (2 questionable structures)

Orientia tsutsugamushi str. Ikeda (2 questionable structures)

Paenibacillus sp. JDR-2 (3 questionable structures)

Parabacteroides distasonis ATCC 8503 (1 CRISPR)

Paracoccus denitrificans PD1222 (1 CRISPR, 2 questionable structures)

Parvibaculum lavamentivorans DS-1 (1 CRISPR)

Pasteurella multocida subsp. multocida str. Pm70 (4 CRISPRs)

Pectobacterium carotovorum subsp. carotovorum PC1 (1 CRISPR, 1 questionable structure)

Pectobacterium wasabiae WPP163 (4 CRISPRs, 2 questionable structures)

Pediococcus pentosaceus ATCC 25745

Pedobacter heparinus DSM 2366 (1 questionable structure)

Pelobacter carbinolicus DSM 2380 (1 CRISPR)

Pelobacter propionicus DSM 2379 (2 CRISPRs, 1 questionable structure)

Pelodictyon luteolum DSM 273 (1 CRISPR)

Pelodictyon phaeoclathratiforme BU-1 (3 CRISPRs, 2 questionable structures)

Pelotomaculum thermopropionicum SI (5 CRISPRs)

Persephonella marina EX-H1 (5 CRISPRs)

Phenylobacterium zucineum HLK1

Photobacterium profundum SS9 (2 CRISPRs, 1 questionable structure)

Photorhabdus asymbiotica (6 CRISPRs, 3 questionable structures)

Photorhabdus luminescens subsp. laumondii TTO1 (6 CRISPRs, 3 questionable structures)

Pirellula staleyi DSM 6068 (2 CRISPRs, 3 questionable structures)

Polaromonas naphthalenivorans CJ2 (3 questionable structures)

Polaromonas sp. JS666 (7 questionable structures)

Polynucleobacter necessarius STIR1

Polynucleobacter sp. QLW-P1DMWA-1

Porphyromonas gingivalis ATCC 33277 (4 CRISPRs, 7 questionable structures)

Porphyromonas gingivalis W83 (4 CRISPRs, 1 questionable structure)

Prochlorococcus marinus str. AS9601 (1 questionable structure)

Prochlorococcus marinus str. MIT 9215

Prochlorococcus marinus str. MIT 9301

Prochlorococcus marinus str. MIT 9303 (2 questionable structures)

Prochlorococcus marinus str. MIT 9312

Prochlorococcus marinus str. MIT 9313

Prochlorococcus marinus str. MIT 9515 (1 questionable structure)

Prochlorococcus marinus str. NATL1A

Prochlorococcus marinus str. NATL2A

Prochlorococcus marinus subsp. marinus str. CCMP1375

Prochlorococcus marinus subsp. pastoris str. CCMP1986

Propionibacterium acnes KPA171202

Prosthecochloris aestuarii DSM 271 (5 CRISPRs, 1 questionable structure)

Prosthecochloris vibrioformis DSM 265 (2 CRISPRs)

Proteus mirabilis

Proteus mirabilis HI4320

Pseudoalteromonas atlantica T6c (1 questionable structure)

Pseudoalteromonas haloplanktis TAC125 (1 questionable structure)

Pseudomonas aeruginosa LESB58 (1 CRISPR)

Pseudomonas aeruginosa PA7 (2 CRISPRs, 1 questionable structure)

Pseudomonas aeruginosa PAO1

Pseudomonas aeruginosa UCBPP-PA14 (2 CRISPRs)

Pseudomonas entomophila L48 (1 questionable structure)

Pseudomonas fluorescens Pf-5 (2 questionable structures)

Pseudomonas fluorescens PfO-1

Pseudomonas fluorescens SBW25

Pseudomonas mendocina ymp (2 CRISPRs)

Pseudomonas putida F1 (1 questionable structure)

Pseudomonas putida GB-1

Pseudomonas putida KT2440 (2 questionable structures)

Pseudomonas putida W619 (1 questionable structure)

Pseudomonas stutzeri A1501 (1 CRISPR)

Pseudomonas syringae pv. phaseolicola 1448A (2 questionable structures)

Pseudomonas syringae pv. syringae B728a (1 questionable structure)

Pseudomonas syringae pv. tomato str. DC3000

Psychrobacter arcticus 273-4 (1 questionable structure)

Psychrobacter cryohalolentis K5

Psychrobacter sp. PRwf-1 (1 CRISPR)

Psychromonas ingrahamii 37 (1 CRISPR, 22 questionable structures)

Ralstonia eutropha H16

Ralstonia eutropha JMP134

Ralstonia metallidurans CH34 (1 questionable structure)

Ralstonia pickettii 12D

Ralstonia pickettii 12J

Ralstonia solanacearum GMI1000

Renibacterium salmoninarum ATCC 33209

Rhizobium etli CFN 42

Rhizobium etli CIAT 652

Rhizobium leguminosarum bv. trifolii WSM1325 (1 questionable structure)

Rhizobium leguminosarum bv. trifolii WSM2304 (1 questionable structure)

Rhizobium leguminosarum bv. viciae 3841 (3 questionable structures)

Rhizobium sp. NGR234

Rhodobacter sphaeroides 2.4.1 (1 questionable structure)

Rhodobacter sphaeroides ATCC 17025 (1 questionable structure)

Rhodobacter sphaeroides ATCC 17029 (1 questionable structure)

Rhodobacter sphaeroides KD131 (1 CRISPR, 2 questionable structures)

Rhodococcus erythropolis PR4 (3 questionable structures)

Rhodococcus opacus B4

Rhodococcus sp. RHA1

Rhodoferax ferrireducens T118 (2 CRISPRs, 4 questionable structures)

Rhodopirellula baltica SH 1 (1 questionable structure)

Rhodopseudomonas palustris BisA53 (2 questionable structures)

Rhodopseudomonas palustris BisB18 (1 CRISPR, 1 questionable structure)

Rhodopseudomonas palustris BisB5 (1 CRISPR, 1 questionable structure)

Rhodopseudomonas palustris CGA009 (1 questionable structure)

Rhodopseudomonas palustris HaA2 (2 questionable structures)

Rhodopseudomonas palustris TIE-1

Rhodospirillum centenum SW (7 CRISPRs, 1 questionable structure)

Rhodospirillum rubrum ATCC 11170 (12 CRISPRs, 2 questionable structures)

Rhodothermus marinus DSM 4252 (9 CRISPRs, 4 questionable structures)

Rickettsia africae ESF-5

Rickettsia akari str. Hartford

Rickettsia bellii OSU 85-389 (1 questionable structure)

Rickettsia bellii RML369-C (2 questionable structures)

Rickettsia canadensis str. McKiel

Rickettsia conorii str. Malish 7 (1 questionable structure)

Rickettsia felis URRWXCal2

Rickettsia massiliae MTU5

Rickettsia peacockii str. Rustic

Rickettsia prowazekii str. Madrid E

Rickettsia rickettsii str. 'Sheila Smith'

Rickettsia rickettsii str. Iowa

Rickettsia typhi str. Wilmington

Robiginitalea biformata HTCC2501 (2 questionable structures)

Roseiflexus castenholzii DSM 13941 (7 CRISPRs, 35 questionable structures)

Roseiflexus sp. RS-1 (14 CRISPRs, 23 questionable structures)

Roseobacter denitrificans OCh 114

Rothia mucilaginosa DY-18 (2 CRISPRs, 7 questionable structures)

Rubrobacter xylanophilus DSM 9941 (4 CRISPRs, 1 questionable structure)

Saccharomonospora viridis DSM 43017 (10 CRISPRs)

Saccharophagus degradans 2-40 (1 questionable structure)

Saccharopolyspora erythraea NRRL 2338 (4 CRISPRs, 3 questionable structures)

Salinibacter ruber DSM 13855

Salinispora tropica CNB-440 (3 CRISPRs)

Salmonella enterica subsp. enterica serovar Agona str. SL483 (2 CRISPRs)

Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 (2 CRISPRs)

Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 (2 CRISPRs)

Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 (2 CRISPRs)

Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 (2 CRISPRs)

Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 (3 CRISPRs)

Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601 (2 CRISPRs, 1 questionable structure)

Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 (2 CRISPRs, 1 questionable structure)

Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594 (2 CRISPRs)

Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 (2 CRISPRs)

Salmonella enterica subsp. enterica serovar Typhi str. CT18 (1 CRISPR)

Salmonella enterica subsp. enterica serovar Typhi Ty2 (1 CRISPR)

Salmonella typhimurium LT2 (3 CRISPRs)

Sebaldella termitidis ATCC 33386 (1 CRISPR, 5 questionable structures)

Serratia proteamaculans 568 (1 questionable structure)

Shewanella amazonensis SB2B (4 questionable structures)

Shewanella baltica OS155 (2 questionable structures)

Shewanella baltica OS185 (1 CRISPR)

Shewanella baltica OS223

Shewanella denitrificans OS217

Shewanella frigidimarina NCIMB 400

Shewanella halifaxensis HAW-EB4 (1 questionable structure)

Shewanella loihica PV-4 (1 questionable structure)

Shewanella oneidensis MR-1 (3 questionable structures)

Shewanella pealeana ATCC 700345 (3 questionable structures)

Shewanella piezotolerans WP3 (1 CRISPR)

Shewanella putrefaciens CN-32 (1 CRISPR, 1 questionable structure)

Shewanella sediminis HAW-EB3 (2 questionable structures)

Shewanella sp. ANA-3 (1 CRISPR)

Shewanella sp. MR-4 (1 questionable structure)

Shewanella sp. MR-7

Shewanella sp. W3-18-1 (2 CRISPRs, 5 questionable structures)

Shewanella woodyi ATCC 51908 (2 questionable structures)

Shigella boydii CDC 3083-94 (1 questionable structure)

Shigella boydii Sb227 (1 CRISPR, 1 questionable structure)

Shigella dysenteriae Sd197 (1 questionable structure)

Shigella flexneri 2a str. 2457T (1 CRISPR, 1 questionable structure)

Shigella flexneri 2a str. 301 (1 CRISPR, 1 questionable structure)

Shigella flexneri 5 str. 8401 (1 CRISPR, 2 questionable structures)

Shigella sonnei Ss046 (2 CRISPRs, 2 questionable structures)

Silicibacter pomeroyi DSS-3

Silicibacter sp. TM1040

Sinorhizobium medicae WSM419

Sinorhizobium meliloti 1021 (1 questionable structure)

Slackia heliotrinireducens DSM 20476 (2 questionable structures)

Sodalis glossinidius str. 'morsitans' (1 questionable structure)

Solibacter usitatus Ellin6076 (3 questionable structures)

Sorangium cellulosum 'So ce 56' (6 CRISPRs, 9 questionable structures)

Sphaerobacter thermophilus DSM 20745 (1 CRISPR, 5 questionable structures)

Sphingomonas wittichii RW1 (1 questionable structure)

Sphingopyxis alaskensis RB2256

Spirosoma linguale DSM 74 (1 CRISPR, 2 questionable structures)

Staphylococcus aureus RF122 (5 questionable structures)

Staphylococcus aureus subsp. aureus COL (5 questionable structures)

Staphylococcus aureus subsp. aureus ED98 (9 questionable structures)

Staphylococcus aureus subsp. aureus JH1 (8 questionable structures)

Staphylococcus aureus subsp. aureus JH9 (8 questionable structures)

Staphylococcus aureus subsp. aureus MRSA252 (4 questionable structures)

Staphylococcus aureus subsp. aureus MSSA476 (10 questionable structures)

Staphylococcus aureus subsp. aureus Mu3 (8 questionable structures)

Staphylococcus aureus subsp. aureus Mu50 (8 questionable structures)

Staphylococcus aureus subsp. aureus MW2 (9 questionable structures)

Staphylococcus aureus subsp. aureus N315 (9 questionable structures)

Staphylococcus aureus subsp. aureus NCTC 8325 (3 questionable structures)

Staphylococcus aureus subsp. aureus str. Newman (4 questionable structures)

Staphylococcus aureus subsp. aureus USA300 (3 questionable structures)

Staphylococcus carnosus subsp. carnosus TM300

Staphylococcus epidermidis ATCC 12228 (1 questionable structure)

Staphylococcus epidermidis RP62A (1 CRISPR, 1 questionable structure)

Staphylococcus haemolyticus JCSC1435 (1 questionable structure)

Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Stenotrophomonas maltophilia K279a (4 questionable structures)

Stenotrophomonas maltophilia R551-3 (6 questionable structures)

Streptobacillus moniliformis DSM 12112 (1 CRISPR)

Streptococcus agalactiae 2603V/R (1 CRISPR)

Streptococcus agalactiae A909 (1 CRISPR)

Streptococcus agalactiae NEM316 (1 CRISPR, 1 questionable structure)

Streptococcus dysgalactiae subsp. equisimilis GGS_124 (1 CRISPR)

Streptococcus equi subsp. equi 4047 (3 questionable structures)

Streptococcus equi subsp. zooepidemicus (1 CRISPR, 2 questionable structures)

Streptococcus equi subsp. zooepidemicus MGCS10565 (2 CRISPRs, 2 questionable structures)

Streptococcus gordonii str. Challis substr. CH1 (1 CRISPR, 1 questionable structure)

Streptococcus mutans UA159 (1 CRISPR)

Streptococcus pneumoniae 70585 (1 questionable structure)

Streptococcus pneumoniae ATCC 700669 (1 questionable structure)

Streptococcus pneumoniae CGSP14

Streptococcus pneumoniae D39 (1 questionable structure)

Streptococcus pneumoniae G54

Streptococcus pneumoniae Hungary19A-6

Streptococcus pneumoniae JJA (1 questionable structure)

Streptococcus pneumoniae P1031 (1 questionable structure)

Streptococcus pneumoniae R6 (1 questionable structure)

Streptococcus pneumoniae Taiwan19F-14 (2 questionable structures)

Streptococcus pneumoniae TIGR4

Streptococcus pyogenes M1 GAS (2 CRISPRs)

Streptococcus pyogenes MGAS10270 (2 CRISPRs)

Streptococcus pyogenes MGAS10394

Streptococcus pyogenes MGAS10750 (1 CRISPR)

Streptococcus pyogenes MGAS2096 (1 CRISPR)

Streptococcus pyogenes MGAS315

Streptococcus pyogenes MGAS5005 (2 CRISPRs)

Streptococcus pyogenes MGAS6180 (2 CRISPRs, 1 questionable structure)

Streptococcus pyogenes MGAS8232

Streptococcus pyogenes MGAS9429 (1 CRISPR)

Streptococcus pyogenes NZ131 (2 CRISPRs)

Streptococcus pyogenes SSI-1

Streptococcus pyogenes str. Manfredo (2 questionable structures)

Streptococcus sanguinis SK36 (3 CRISPRs, 1 questionable structure)

Streptococcus suis 05ZYH33 (1 questionable structure)

Streptococcus suis 98HAH33 (1 questionable structure)

Streptococcus suis BM407 (1 questionable structure)

Streptococcus suis P1/7 (1 questionable structure)

Streptococcus suis SC84 (1 questionable structure)

Streptococcus thermophilus CNRZ1066 (1 CRISPR)

Streptococcus thermophilus LMD-9 (3 CRISPRs, 1 questionable structure)

Streptococcus thermophilus LMG 18311 (2 CRISPRs)

Streptococcus uberis 0140J

Streptomyces avermitilis MA-4680 (3 CRISPRs, 4 questionable structures)

Streptomyces coelicolor A3(2) (1 CRISPR, 2 questionable structures)

Streptomyces griseus subsp. griseus NBRC 13350 (3 CRISPRs, 7 questionable structures)

Streptosporangium roseum DSM 43021

Sulfurihydrogenibium azorense Az-Fu1 (13 CRISPRs)

Sulfurihydrogenibium sp. YO3AOP1 (3 CRISPRs, 3 questionable structures)

Sulfurospirillum deleyianum DSM 6946 (1 CRISPR, 2 questionable structures)

Sulfurovum sp. NBC37-1 (3 questionable structures)

Symbiobacterium thermophilum IAM 14863 (3 CRISPRs)

Synechococcus elongatus PCC 6301

Synechococcus elongatus PCC 7942

Synechococcus sp. CC9311

Synechococcus sp. CC9605

Synechococcus sp. CC9902 (1 questionable structure)

Synechococcus sp. JA-2-3B'a(2-13) (6 CRISPRs, 4 questionable structures)

Synechococcus sp. JA-3-3Ab (9 CRISPRs, 1 questionable structure)

Synechococcus sp. RCC307

Synechococcus sp. WH 7803

Synechococcus sp. WH 8102

Synechocystis sp. PCC 6803 (3 CRISPRs)

Syntrophobacter fumaroxidans MPOB (2 CRISPRs, 10 questionable structures)

Syntrophomonas wolfei subsp. wolfei str. Goettingen (5 CRISPRs, 1 questionable structure)

Syntrophus aciditrophicus SB (2 CRISPRs, 1 questionable structure)

Teredinibacter turnerae T7901 (2 CRISPRs, 1 questionable structure)

Thauera sp. MZ1T (1 CRISPR, 4 questionable structures)

Thermanaerovibrio acidaminovorans DSM 6589

Thermoanaerobacter pseudethanolicus ATCC 33223 (7 CRISPRs)

Thermoanaerobacter sp. X514 (4 CRISPRs)

Thermoanaerobacter tengcongensis MB4 (3 CRISPRs)

Thermobaculum terrenum ATCC BAA-798 (5 CRISPRs, 3 questionable structures)

Thermobifida fusca YX (14 CRISPRs, 2 questionable structures)

Thermodesulfovibrio yellowstonii DSM 11347 (5 CRISPRs)

Thermomicrobium roseum DSM 5159 (1 CRISPR, 2 questionable structures)

Thermomonospora curvata DSM 43183 (14 CRISPRs, 6 questionable structures)

Thermosipho africanus TCF52B (12 CRISPRs)

Thermosipho melanesiensis BI429 (5 CRISPRs)

Thermosynechococcus elongatus BP-1 (1 questionable structure)

Thermotoga maritima MSB8 (8 CRISPRs)

Thermotoga naphthophila RKU-10 (8 CRISPRs)

Thermotoga neapolitana DSM 4359 (8 CRISPRs)

Thermotoga petrophila (8 CRISPRs, 1 questionable structure)

Thermotoga sp. RQ2 (8 CRISPRs)

Thermus thermophilus HB27 (10 CRISPRs)

Thermus thermophilus HB8 (11 CRISPRs)

Thioalkalivibrio sp. HL-EbGR7 (3 CRISPRs, 5 questionable structures)

Thiobacillus denitrificans ATCC 25259

Thiomicrospira crunogena XCL-2

Thiomicrospira denitrificans ATCC 33889 (1 questionable structure)

Tolumonas auensis DSM 9187 (1 CRISPR, 1 questionable structure)

Treponema denticola ATCC 35405 (1 CRISPR)

Treponema pallidum subsp. pallidum SS14

Treponema pallidum subsp. pallidum str. Nichols

Trichodesmium erythraeum IMS101 (1 CRISPR, 18 questionable structures)

Tropheryma whipplei str. Twist

Tropheryma whipplei TW08/27 (1 questionable structure)

Ureaplasma parvum serovar 3 str. ATCC 27815

Ureaplasma parvum serovar 3 str. ATCC 700970

Ureaplasma urealyticum serovar 10 str. ATCC 33699

Veillonella parvula DSM 2008 (5 CRISPRs, 5 questionable structures)

Verminephrobacter eiseniae EF01-2 (3 CRISPRs)

Vibrio cholerae M66-2

Vibrio cholerae MJ-1236

Vibrio cholerae O1 biovar eltor str. N16961

Vibrio cholerae O395 (1 CRISPR)

Vibrio fischeri ES114

Vibrio fischeri MJ11 (1 questionable structure)

Vibrio harveyi ATCC BAA-1116 (1 CRISPR, 2 questionable structures)

Vibrio parahaemolyticus RIMD 2210633 (1 CRISPR)

Vibrio sp. Ex25 (1 questionable structure)

Vibrio splendidus LGP32

Vibrio vulnificus CMCP6 (1 questionable structure)

Vibrio vulnificus YJ016 (2 CRISPRs)

Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis

Wolbachia endosymbiont of Culex quinquefasciatus Pel

Wolbachia endosymbiont of Drosophila melanogaster (2 questionable structures)

Wolbachia endosymbiont strain TRS of Brugia malayi

Wolbachia sp. wRi (2 questionable structures)

Wolinella succinogenes DSM 1740 (2 CRISPRs)

Xanthobacter autotrophicus Py2 (1 questionable structure)

Xanthomonas axonopodis pv. citri str. 306 (1 CRISPR, 1 questionable structure)

Xanthomonas campestris pv. campestris str. 8004 (1 questionable structure)

Xanthomonas campestris pv. campestris str. ATCC 33913 (1 questionable structure)

Xanthomonas campestris pv. campestris str. B100 (1 questionable structure)

Xanthomonas campestris pv. vesicatoria str. 85-10 (2 questionable structures)

Xanthomonas oryzae pv. oryzae KACC10331 (1 CRISPR)

Xanthomonas oryzae pv. oryzae MAFF 311018 (1 CRISPR)

Xanthomonas oryzae pv. oryzae PXO99A (1 CRISPR)

Xylanimonas cellulosilytica DSM 15894 (2 CRISPRs, 14 questionable structures)

Xylella fastidiosa 9a5c

Xylella fastidiosa M12 (1 questionable structure)

Xylella fastidiosa M23 (1 questionable structure)

Xylella fastidiosa Temecula1 (1 questionable structure)

Yersinia enterocolitica subsp. enterocolitica 8081

Yersinia pestis Antiqua (3 CRISPRs, 1 questionable structure)

Yersinia pestis biovar Microtus str. 91001 (2 CRISPRs)

Yersinia pestis CO92 (3 CRISPRs)

Yersinia pestis KIM (3 CRISPRs, 1 questionable structure)

Yersinia pestis Nepal516 (3 CRISPRs)

Yersinia pestis Pestoides F (3 CRISPRs)

Yersinia pseudotuberculosis IP 31758 (2 CRISPRs)

Yersinia pseudotuberculosis IP 32953 (3 CRISPRs, 3 questionable structures)

Yersinia pseudotuberculosis PB1/+ (3 CRISPRs, 3 questionable structures)

Yersinia pseudotuberculosis YPIII (3 CRISPRs)

Zymomonas mobilis subsp. mobilis NCIMB 11163 (4 CRISPRs)

Zymomonas mobilis subsp. mobilis ZM4 (3 CRISPRs)

Archea

Aeropyrum pernix K1     (3 CRISPRs, 1 questionable structure)

Archaeoglobus fulgidus DSM 4304     (3 CRISPRs)

Archaeoglobus profundus DSM 5631

Candidatus Korarchaeum cryptofilum OPF8     (2 CRISPRs, 2 questionable structures)

Candidatus Methanoregula boonei 6A8

Candidatus Methanosphaerula palustris E1-9c     (2 CRISPRs, 4 questionable structures)

Desulfurococcus kamchatkensis 1221n     (2 CRISPRs)

Haloarcula marismortui ATCC 43049     (4 CRISPRs, 2 questionable structures)

Halobacterium salinarum R1     (1 questionable structure)

Halobacterium sp. NRC-1

Halomicrobium mukohataei DSM 12286     (2 CRISPRs, 5 questionable structures)

Haloquadratum walsbyi DSM 16790     (2 CRISPRs)

Halorhabdus utahensis DSM 12940     (1 CRISPR)

Halorubrum lacusprofundi ATCC 49239     (5 CRISPRs, 2 questionable structures)

Haloterrigena turkmenica DSM 5511     (1 CRISPR, 6 questionable structures)

Hyperthermus butylicus DSM 5456     (2 CRISPRs)

Ignicoccus hospitalis KIN4/I     (12 CRISPRs)

Metallosphaera sedula DSM 5348     (4 CRISPRs)

Methanobrevibacter smithii ATCC 35061     (1 CRISPR, 4 questionable structures)

Methanocaldococcus fervens AG86     (8 CRISPRs)

Methanocaldococcus jannaschii DSM 2661     (20 CRISPRs)

Methanocaldococcus vulcanius M7     (19 CRISPRs, 2 questionable structures)

Methanocella paludicola SANAE     (4 questionable structures)

Methanococcoides burtonii DSM 6242     (2 CRISPRs, 1 questionable structure)

Methanococcus aeolicus Nankai-3     (1 CRISPR, 1 questionable structure)

Methanococcus maripaludis C5     (1 CRISPR, 4 questionable structures)

Methanococcus maripaludis C7

Methanococcus maripaludis S2

Methanococcus vannielii SB     (2 CRISPRs)

Methanocorpusculum labreanum Z     (1 CRISPR, 4 questionable structures)

Methanoculleus marisnigri JR1     (1 CRISPR, 1 questionable structure)

Methanopyrus kandleri AV19     (5 CRISPRs)

Methanosaeta thermophila PT     (2 CRISPRs, 17 questionable structures)

Methanosarcina acetivorans C2A     (5 CRISPRs, 5 questionable structures)

Methanosarcina barkeri str. fusaro     (4 CRISPRs, 15 questionable structures)

Methanosarcina mazei Go1     (4 CRISPRs, 4 questionable structures)

Methanosphaera stadtmanae DSM 3091     (3 CRISPRs)

Methanospirillum hungatei JF-1     (7 CRISPRs)

Methanothermobacter thermautotrophicus str. Delta H     (2 CRISPRs, 12 questionable structures)

Nanoarchaeum equitans Kin4-M     (2 CRISPRs)

Natronomonas pharaonis DSM 2160     (4 CRISPRs, 1 questionable structure)

Picrophilus torridus DSM 9790     (4 CRISPRs)

Pyrobaculum aerophilum str. IM2     (6 CRISPRs)

Pyrobaculum arsenaticum DSM 13514     (4 CRISPRs)

Pyrobaculum calidifontis JCM 11548     (7 CRISPRs)

Pyrobaculum islandicum DSM 4184     (5 CRISPRs)

Pyrococcus abyssi GE5     (4 CRISPRs)

Pyrococcus furiosus DSM 3638     (7 CRISPRs, 1 questionable structure)

Pyrococcus horikoshii OT3     (6 CRISPRs)

Staphylothermus marinus F1     (11 CRISPRs)

Sulfolobus acidocaldarius DSM 639     (4 CRISPRs)

Sulfolobus islandicus L.S.2.15     (4 CRISPRs, 1 questionable structure)

Sulfolobus islandicus M.14.25     (3 CRISPRs, 2 questionable structures)

Sulfolobus islandicus M.16.27     (3 CRISPRs, 1 questionable structure)

Sulfolobus islandicus M.16.4     (2 CRISPRs, 1 questionable structure)

Sulfolobus islandicus Y.G.57.14     (2 CRISPRs, 1 questionable structure)

Sulfolobus islandicus Y.N.15.51     (2 CRISPRs, 1 questionable structure)

Sulfolobus solfataricus P2     (7 CRISPRs, 3 questionable structures)

Sulfolobus tokodaii str. 7     (5 CRISPRs, 3 questionable structures)

Thermococcus gammatolerans EJ3     (3 CRISPRs)

Thermococcus kodakarensis KOD1     (3 CRISPRs)

Thermococcus onnurineus NA1     (6 CRISPRs)

Thermococcus sibiricus MM 739     (1 CRISPR)

Thermofilum pendens Hrk 5     (10 CRISPRs)

Thermoplasma acidophilum DSM 1728     (1 CRISPR, 1 questionable structure)

Thermoplasma volcanium GSS1     (2 CRISPRs)

Thermoproteus neutrophilus V24Sta     (10 CRISPRs)

CRISPRdb

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Data Summary

Bacteria

Archea

	Genomes analysed	CRISPRs found (*)
Archea	67	261(61)
Bacteria	928	1197(415)
Total	995	1458(476)